MmuINT0179344 @ mm10
Intron Retention
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:35787718-35791762:-
Coord C1 exon
chr7:35791648-35791762
Coord A exon
chr7:35787833-35791647
Coord C2 exon
chr7:35787718-35787832
Length
3815 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTAAACCTTTTTCCTTGAAGGGA
3' ss Score
6.7
Exon sequences
Seq C1 exon
AGCCAACTGAGGAATCATGAGAGAGAGCAGCACTGCCTGCCCAACACCTTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGATGCCGCTGATGGAAAGTGTGCTCAGGAAG
Seq A exon
GTATGTGTGCATTTTCATTAGCATCTATGAACTGCACAGGATGGCGGCTTTCATTAGGACGGTTTTGTGAATGCATGTAATGTACTCTGATGATGTTCGCGCACACACCGTCATCCTCACTTGTACCTTGTTAAATACAGTCTGCACTGACAAGCTTATGAGGTGAAAATGCCCTTCGTTGTCATGGAACAGTGTGTGTATCTGCCCTCTTCTATACTGTGGGTGAGAATGAATCTTCCCTTTGTTCCTAAGGAAACTCCAAGAATTGACTAGAGTAAATTACAAGTTCTGGGTCAGAAGTGCTAAATTAGTAAGGACTTGGCTAAACCCAGGCAGATAGATCTTATGGTTAAAATTTGCAGGGGTTTGTAAGGGCCAGGCTAGAGCAGAGACCCTTGGAAGGTAACGGGCCGGCCGCAAGCTGGGAAGGTGGGGGCTAGCGCAGAAGGCAAGCCTCCGCCCCCTCTCTAGCACCAAATGACCTGCCTGCTGAGGCACAGCTTTTGCAGATGGCAACCCCCACCTCAAACTTTAACTGAGGCTTCCTGCTGTGAGCTTACTCTTCTCCAAGTGTGACTTCCAGACTTCATCTGCATTATTTAAACACACACAGGAACCTTTTATGCACTAGTTAGGTACTAGTCGGCGGAGTATCTGGTAATAGGAATATTAGAATCAAAAGATTTAATTAGAGCTCCATGAAAAGGCGGATGCCACATCCAGAGAATGAGGGATTGAGTGTAATAAGCTGTGCTTCCTGGCTGTGGTTCACGTAAATTGATATGCTTTAAATGTCTCCAGTGTGGTACACAGTGTTTATGGGAAATAAAACATATTGGGGTGACTTTCCTTTTTAGATTTCCTAAGAATTAAAGTTAGAAACAACTGCAGAGTAAAATGTTTTACCATAATGTCTCATTAAATTATACCCCAGAAAGCATAACTGATTCCAGAATGTTTCTGAAGGAACTGATTTTGACACCACTGTAGCACCAGAATCCCCTTGTCAAACAGATGCCACCCCGTAAAACCATCCCGAACAAAAGGAGTTTACGACATGGCATCTGCTTTCGAGGTGGATGGCTGAGCGAAAACAGTTTTGTTTCCTTTCTACAGAATAGCCCTAAATGCCTCTTTTTATTTTAATTCATTATGTTTCCATATCCCTTCTAAAGGAGACATTAAGCATTAGACATGATTGGCCCGTAAATCCTAATGAGGGAATAAAGTGTGTGCAACTTAGTAGCGCCACCTGCAGTTGACTCCAGCAGCATTGAAAGCAAGGGCTTAAAAGTAATCAGTGGTTTTTAGCAGATTCAGTGAAGACATCAACATGGACACTCCAGAGACACAGTGTTCGTACCTTCCTCTGCTCTGCAATTTTTCTGTGTGACTTCGACGCTTGCTCCTGGGGTTAATGAGGTGTAGATTTAAGTTGCATACCATAATCATCTTGGTTTTTGGTTTGGTTTAGGAGTTTTGTTTTGTTTATTTTTTTTTTGCAGTGCTAGTGGTAGGTGCATGCTGAGCAAGCACTCTTCAACTGACCTTCACCCTAGCCCTTACCATGATTTTAGTTTTAACCCCCACTTAGCTGCATTTGCTGCTCTGTCAAACTATAGCAGGCCTAGCTGATCTCTTCCTGCATACTCACACCTGGATGGGTACTTTGATTAATAACGTGTGGTTGTGATTCATGTTTTGATAACAATCTCTTAACTATTCCGTACGTTTATTAAACAAAAAGGGAAGGGCATGACTGTCGCTGTGTGCAGTCTTTGCTATTGATATAGCATGGACGACACTAGCATGCTTTCATTACAGAGAACTGATGTAACAGTACTGCAGAATTCGTTCAGGCTAAAGGCATGGCACACCGATCCTGAGGGGGTTCTCTTGCCAAGTGCTGGGAGCACAGTGAAGGGTGTCACTGCCCTTGTGGAATCAGAAGTGGACTAGTGGGTATGATGGCAGCAAATGTCCTGGCATAGCACTTCTGGACTTGCAGACTGTGTCTCCTTGTGAAGTTTAAATTGTCCTTTCGTAGAGACCTGTCATTTGTGCAGCCCTGGGTTTTTAATGCCAGCGTTGCAGAGTCTGACTGGTGGTGTGCAGAAAGAGCACTAGGCTCATTCAGCCATGTGAGAAGGTCCTCTACTTCCCATTCTGTAGAGAAGGCAAATGTGGCCTCAAGAGCTGACATCATTTGCTCATTCTCACACCAGTGGTCGAGCAGAAATTAAGCCCGAGTCGTTGAACTTTAAATCCAGTCTTGATTCTATTGGAAACATTTGCTAGAAGTAGCACGGTCTCTCATTCTGTGCTATATTAGGCTTTTCCATCTGTCAGTTTTATTAGTTGTCATTGATCTGTAATATTTTTCACACACAAAAAAATTATCCAATATTTCACAACTCATTTTTTTTCAGTTTTTTTTTCAAAAACTATATTTGGAACAATGCCATTTATAATCAAGTCCAAGTTTTTAACCTACCAATTAAAAGCGATGCTTAGATTGTAATTATGATTAGTGTATTAATGTTATAGATTTATACTAGGAAATTGGGACGTTTTGTCCTGCTTGGCAGTAGTTATTAACTAAAGAAAAGTTCAATTTTAGAATGCTTAAATTTAACTTAAGAATTTTCTTTGTTGAAATTTCACCGTGGGCTTTCTTTTCTTCTGCAATGTTACTTAGATCCTGTGTGCACTCCTTCCCACCTAGGCTTGCTTCATGGCTTGCTCCCTGCCCAGAACACATGGCTCTTCCTGCTCTGCCTAAGCCTTGGGCTTCCATGTGTACCTGCTGAGGAACACAGGGAGCTGGGAACCAGGACAGAAAGCATAGGCAGTCTCCAGGAGCAGTGCTTAGGATGGAGCCCTAGAGCTTATGTGAGCAGCTCCTCATTTGCAGAATGAGCTGGTAATAGGGCCTGTATCACTGGGCTCGAGTTTGCTGCACATGAGTCTTTTCGGTCTCTGCCCCCCTCCTCCCCTCCCCCAGCCCATTAAGCGTGACTGTGCTGAGTTGTAGAACTCCTCAGAACTGTTGATTTCTTTTCCTCCTAAGTTTAATTGATGGCTGACATTAAGCAGTAGTAAACCAAGCAAACCTACATGGTAAAAATGTCAGAGTTTTATACGCAGCTTGCTGTGTATGACTCGTGGCCAGTTTATTTTTATTTTATGTAGATCACTGTTTTGCTCTATGAATGTATGTATGTGTGCTACATGAGTACAGTGCCTGGAGAGGCAAGAAAAAGACATGGATCCCTGAAACTCAGGTCATAGACAGTTGAGAGCCACCAAGTAGGTATTTGGAACTAAACCTGGGTCCTCTGCAAAACTAGCTAGTGCTTTTGACTGAGCCATCTCTCCAGCCTCTAGCCATACTTGATAATACTTTATTATTTTAGCTTGTTGGCAAATAAATGTTTCTTTAAGACACTGTGACCATTACTGATTAGAATAACACCTGTCAAGTTCACAGTGTAACTTGGTTAATTTAGCTGCTAACTTAGTCAGCACAACATCTGAGGGCAAGTTCATTCTCCTGTAGAACCTGGAACATGGTACACAGAACCAGCCCAACCTGTCCATGTTTACAGGTCAGATGATATGGTGTTCAGTTCATGCTTGCTGATGGTCTGAGTGCAAGAAAGTCTAGGGAGCTGCTTCAAGTGTGTTAATTATACTGTGAGAGAGCCTTGATTAAAACCTTGGCACGTAGTATCATAATTACTTGTTCATGATGAGGTGTAAATGCTCCCATGTGAGTCTTACCAAATCATGCCTCTAAACCTTTTTCCTTGAAG
Seq C2 exon
GGAACAAGCCTTCAACCCAGAAACAGTATAGGTGTGATGTGTGTGATTACACAAGTACAACGTACGTCGGCGTCAGGAACCACAGACGAGTCCATAACTCAGATAAGCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452:ENSMUST00000061586:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(57.7=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types