GgaINT0023778 @ galGal3
Intron Retention
Gene
ENSGALG00000000817 | ZNF821
Description
NA
Coordinates
chr11:21703389-21709688:+
Coord C1 exon
chr11:21703389-21703480
Coord A exon
chr11:21703481-21709562
Coord C2 exon
chr11:21709563-21709688
Length
6082 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TTTGTCCTTGTGGCTGCCAGGGG
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTGAGCCCTCTGCTGAGGGAACGAACAGACTGTGCTCCCAGGTCAGGGAAACATGTCCCGTCGGAAACAGACCACTCCTAACAAAGTTCACT
Seq A exon
GTGAGTATTATGTTACACAGCACCATGGGATCCTTATCCTAGATGGATAGTTGTGGAGTGAGAAGGGGAGGAGGGTAGTGATGAAAAGGTACTGTTTGTGGGGGAATGGTTACCTACGTTTTGTCTTAGGTTTGTGGGGGAATGGTTACCTACGTTTTGTCTTAGGGCCTCTAATAAGAACTCTGTATGCCAGGGGAGCTGGCAGTGTCCTGACAAGGCAGGACAGGGACAGGCTTGAACAAACTCTGTATAGGTAGGTTTGTGTGCACAGGGCCTATAGCTCTGCTTTGTGTTCACACTATCACAAGTGCAAGTTAGGCTCTGGCCAGTTCTTGGATAGCAATGAAAGTTCTAGGTAGGGTGGTCCGAGTGTACAACTGAAGTCTGGAAGCCCTGGCTTCTGATCTTTGCTCTACGACAGGCTCAAGAGACTGGCTTGGACACGTCACTTAAGCTCACTGTACCTCAGTTTCCCAGCAGATGATGTAAATAAAGCCATTTGCCTTTTCCTGGCAGGGAATGGGCAATGGCTAAGTCAATTAATGGACAGATGTGATTTGTCAGGCCATTCCTGAGCTGAGCTGAGAAGACAGGTGTCTTTCTCCAGCACTGTCAAGACCATTACATTTGTTGGATGGTGAAAGGACTGAAGATGCTGTACATCAGCACTTCTTGTGAGTAGGCTGTAGTGAGGTATTAGTGGAGCTGGGAGACAGCTGTGTGGATGTTCAGCTACAGAGGGACGTCTGCATGGTTTTTGTTTGGCTGGTTACAAAGGGGAGTTGGGAGTCCGAAGCTATGCCCTTGTATATACCCAGCTTTGCAGATGGATAGATGTTTGAAATCTGGGCTTGAATGCAAAAAACAAATCTCTACTTCTGAAGACAAGAGAAAGCAAGGCTGATTGAGATGAAAGGCCTGAGTAATGCTCTGCTATGGTAACTATCATGTCTGTGGGATGGAGAGCTGACTGCTGCGGCTGTAGCAACTGCCTCACTTTGCTGATGCTGCTGGCTTTCCTGTCTCTGTGTGCTGCCTTTTTGAATGGATACAGCAAGAGAAATCTTTGCATGCTGTTCTCTCTGTTAGAGGAAAATACATCCTGACATAACCTAACACTTTGCACACTCTATGAGTGTACCGGTGAGAATTACCTTTGTCTGATTTGAAAGCCCCATAGCCTGCAAGTGCTAGGCTTGAGAGAGCTGACAAAGCTTTCCTTGATGGCCAGTATCAGAGTATTGAGGGTTGACTGTTGGCAGCTGCTCTGACTTGTGCTTTCCCACTCCTGCATCCTGTGTGCTGAGCTCAACAGTTGGTGGAATACAGCTTTATACAGATTTGTCTGCTTGGAATTGTCTTTATTAGATAAACTTCATGCATCCTGTGTTTTCTCTTGAAATGCCAGTAACCTGTCTTCTTTCCACACATATTTGCTTTTGAGAGCGCCCAGATACTTCTTCTGCTGTTTAGACTAGATGTATATAAAGCACGTACTTATTCTGTCAGCCCTGGTGTAGAGTTACAGGCTCTCATCTATGGAGACCAAGGAGTACAACAGCTTTAAAGGTTTATGTCGAGTTTTCATGGTGTTTAGGTGGGCTATTTTCTGTTCTCCACTCCACTGCAGTCGTGTTCTTTAGAAGCTTGTACTGTTATGTACGTGAACTATACATGCTTTGGAATTTGGTCGTCTCATTTTTACATTATTGCTTTTTTGTCTGCAATGCAAGTGATTGTATCATCAGTTTGGGTCTTAGAGAAACTATCTGACAAAGATGCTACCAGCTGACATGAGGCTGAGGTATGGTATCTGGTATGCCATAGAGAAAGGAAGCGTGGGACTTGTTCACCACCTTACATGCAATATTTAGCTGCAGATAAACTATTTGATAGGAGTCACCACGAGTAGCTATGTAGGATCAGAAGAAAATAGGGGGACTGACAGATAGATGAAAAATTGCAACGGTGATGTCTCCTCCTTGGGATGGAAATCTTGTCTGTCTTATGATGAACACCACCAAATCGTTGGGACTTCTCTGTCTACCTAGCCTGCTGTGTATCTGGAGGGCCCAGAATTGCCATGCAGTGCACTGGTGAATGACGAGGAAAATCGGAGAGAGCATCATCTCCAAGATCTGGGTGAGCCAGCAGAATGATGAATCAGGCTGAGACATAGCAGGCACGTTACTGAAACTTCTTGGGACTGAAATTGTTGGGAGGAGAGGAATAAAAGGGACAGCAGGTATGCACCTTTTTATGCAGTTGTCTGCAATTGGGATCAGATCTGGCAGGTTGTGGGGCTTGGGAAGTGCTTTGTGGATTCGCATAAATGCCACTGTGAATATCTAACAGGACAAATTCATGAGAGGATGATGCCTACTTCTTCCTTGCTTGCTGCTCTATGTTATCTTCCTTCTCAGATTCACTTGTGCAAGCAACAGCTACATTTTCCTGTCCCTGGCTTGTTCAGTGCTGCCTCTTTCCAGAGTTATTTTCCAGGCTCGGCATGGCCCCCATTTAACCTTGCTCTCACAACAGCAGTTGCTATCTCCACTTGGCACAGAAGTACTTTGGCATGCAGGGTTGTGTGGTTACAAGTCAAACCACTTTAAACAGAATTTGATGTGTAAGGAAACTTATAATACTACAGAAACAACAGTAAAAAATACTTATTATCATAAGCATGTCATTGTGTGTGATTGCCAGCCCGCTTATAGTTTTCACTGTAGTTATTTCCATTTGGCAGGGTGCAGCACATAATTGGCTTTTAATAATTGAATTTTGTGTTGTCACGTGCTGCGTAAAAAATGCTTTCATCTGACAATATGGTAAGAAATAAAGTTGTAATACTGAAGTATACTTATTGCATTGCCCATTCCTCACTGAATTGAAAAATGCCACACAGTTCTATCGTTCCTGTGGAAGTATCTTCATTCATTTGGTCTTTATTTTCTTCCAGACTCTAAAATATAGAAGTATCTTCTCTCTAAGCAATTAATCTTCTGATCTTGCTTCAAGCCTGTCCTTTGCTGCAATGTCACTCATCAGCTATAGGTTATTCCACTGTTCTTGAGCTTGCCAGGAATTCTACTGCAGTTATTAGAGTGTGCTTTTGTTTCCTCTCCCTGCTATCCCATGAGCTGCTTTTCTTTCTATGGCTACTACCTTTTGCAAGTGATGCTTATTTTAGAGCTCTTGAGAACAGTATTTGTTAATCAAATAAATAACCACTTTCTAGCTCTATTCTGTGTTATCCCAATATCCCATTCATCCTCGGTTTCCCTCCTTCTCCCTCTGATACTCTCTCTCCCTCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTTTGTGCTCTTCAGCATTTCTTGAATTCTGCTGCCTGTAATACTCCCAATTTGAAAAGAAAGTATCTTTCAAGAAATAGCAGTCAGCATTCAAACTGAGCAACAATTGTTATTTGCATCAAAATCCTTGGTTCTTAAAGGGCTCTGTGGGCTGCGGTTATTAACGCTTTCAATTGTTGTTTTTCATTTCAGTAACCGCTACAGCAGTGTGGACAACCCAGAATAGCGATGGGGCAGGTGGATTAGATCCACAGTGGTGGACAGACTTGCAAATTTCAGGTCCAGGAAAGGAACACAGAGAAGACCTACATGAACAGGGACCTTAAATTGATGTACAAGTAGGGAGTAAAGTGGCTTATCTCTGAGAGACTTTTCTGTTTAGGAAGAAAGACAGGGAAATGATGCAGTTTATTTTGATTTTTGTTTTGTGGATTTCGGAGTGAGGTTGTTTGTTTGTGTGTTTATTTTCCAGAACATCTGAGAGTTATCCTGCATTCATACAGTTCAAGAAGGGAAGGGCTAAGGAAAATAATCATTTCTGGCTGCCAACCTGATACACCATCAGATCGTAGCAGTCATAACTGCCCCTGTTGCACAGTACCACAGGGCTGGCCCCTACCTCCACAGCTGCTCTCCTGGCATCCCACTCATTTGCAAGATTATGGAGAGGAGAACTGGAAAGCAAAGCAAAGGCAGTTGTTTGACATTCACTGTTCTACATCTCTAGCTGCTTGTGAAACAAATACAGCGACTTGTTTTGGTGTTGTGGTCAGCCTACAGCCCTTTCTGTAATTAATAAAGAAACTTCTGGAGAAGAGTCTGTGAATTCAATATTGAGCATAATGTCCTTTACTGATAGTGGTGATCCTAAAGCTGTTGCCTGTCTTACTCCCTTGCCACAGAAATGCAAATATATTCAAAGTGGGGTGGAAGTGGGAGTATGTTTGTATGTGAGCATGTGTGTGTAGACAATAAAAACATAACCCTGTACCTATCAAACATTAAAGTTCCATAGCTTCACTGATGTAGGACTTAGTCTGTCAGTAGATGAACTGAGCACTCTTCTCCAAGTTCTTCCAGAGACGCTAGTAGTAGAATAAGAAATTCTGTATAAGCAAAATATAGAATTTTTTAATTTTTTCCCAGTCCCATGATGCCTTTTAGATACAAGCTAGTGGTTTGGTTAACGGTTTGCATTTCTGGCTGTAAGTTGATGGATGGTTCTCCACATTGCACTGAATCAGTGCTAACGTGGTTGTGTGTATGTTATACTGAAAGGCCTCTGGCAGACATGATTGCTCTGCTGGTTGTTGTGATTGGTGTTAGAAGTAGAATCACTCAGTCTCAGAATGGCTTGGGTTGGAAGGGACCTAAGTGATTATCAGTTTCCAACCCCTGCTGCAGGCAGGGCTGCCAGCCGCTAGATGAAGCACTAGGTCAGGTTGCCCAGGTCCCCATCCAGCCTGGCCTTGAACACCTCCAGGGACAGGGCATCCACAGCCCCTCATGAAAACTTTGGAAACTTCTGAAAGGCTTTGAAATTTTCCATAAATTATTGTTTTTTAGAGCAACGTTGGAAATTTTGAGCTAAGCACCAGAAAGGCAGTACGTATATAAATATGGGGCAAAGCTGGCTGAAGCAGTTCAGCATGTGAAATGCACCTGTCCCTGTAACAGGACTGGTGCTCTCTCCGTGGCTCATGAGTGCAATTCCCTGTACTGATGCCAGTTGTGGCCCTATATTAGAAGGGGCAATATTTTTTTGACAGCTGCACTCCGACCTTCTTTGCACTGCATCTTAGATAGTATTTCTGTATTTATGCTTTGAGTAGTTCCTGTGAACTTAGAAATGTTGATTCAAAAGCTGTAGCTGTTTGGGAACTAGTACCTTGCCCCAAGTGCTCATAGCTCATCCACTGCTAAATGCAAATGTTAACTACCTGTAGAATAAAGTTATTTGTTTGTTTTAATGTGAAAATTAGTGGTTGACTTCTATAGTTATTCCATGGAACTGGAAGCTTCGCAGAGATTGCTGTAGGAAGTTTTCTTTCAGAGGAACTCAGATAATTGCCTTCTTTCAGTATGTTTTCTGTTGCCTGTTCTTACGTTGAGTCGAGATACAAATAATTACAAAAACAAACTGTATTTAAAATTTAGTTTAACCTAATGTGGGAATCATGCAAGCACTAATGACTGTACCTTTCCAGACCCTAATATGATCAGATGACTCTGATATGATTAGTTGAATATCCTGTCGCAGTACCATCATGCTGCTTGTAATAGCTTTTAAATGATGTAGAAGAGCCATGTAGCACCACGTCTGATTTGGGATACTGTCATCACCCCTGCATGGCTTTCCCCCACCTACAGCTGTGCTATCACTGTTGGCAGATTGGTTGTCTGGTAAAAGTGGAAGCCACGTGGACAGATGTGGCAGGTGTGGAGCCTTGCAGGTTTTTACACGCAACCGGAGTGGTGTATAAAGGCTGTGTGGAGAGCAGCCTGACACCATACACATCCACTAGCGAGATGTGGGGACTAGACTTGTGTCAGCAGGTGCAGGAGGCTGGAGTTACAGGGCAGGGAAGCACAGAGATTATTTAAATGCTTTCAGAGAGGTGACTTCAGAGGGTCTGCACATTGCAGGTGAGCAACCCCACACCTGTTGCATTTCTGGCAAGCTTTTGTGAAATAATGGAACAGCGCCAATCTGACTTTTTGTCCTTGTGGCTGCCAG
Seq C2 exon
GGGAGCAAGTCTTTGCGGGGCTGGAGGAGCAAGCCCGCCAAGCCATGATGAAAAACAGCTTTCCTGGAGCTCTTGGGGACCAAAGGCCAGCTATTCATCCACTGCAAGACCGCGATTTCAGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817:ENSGALT00000001191:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]