MmuINT0179937 @ mm10
Intron Retention
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:109709411-109717906:+
Coord C1 exon
chr8:109709411-109709527
Coord A exon
chr8:109709528-109717761
Coord C2 exon
chr8:109717762-109717906
Length
8234 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CTTTTTCTTGTGATCACCAGGGG
3' ss Score
7.91
Exon sequences
Seq C1 exon
GTCAGCACCGTACGAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGGAAGAACGGAGCTTGGATATCAGGGAAACATGTCCCGTAGGAAACAGACAAACCCAAATAAAGTTCACT
Seq A exon
GTGAGTACTGGGCTTTGTCTTTTGAAACCTGGGTTGGAATGAAAGAGGAGCCTGAGTTTTGGGGGAGAGGCTCACACTCATTTGTTGGGGGGCGGGGGGAGAAAGGGCTAAAGATTCCCAGTATGGATTTGAAGTATAAAGTTACTAGAGTGCTGTCTAACTTGCCCAAGGGGTATGTATATGTGTTTGATTCATCTTTAATATGAACAATTACAGGAAACTTATTTTGTGAAAAAGTATATTAGGTGTCAAGGCTGTGAAGCAATAAAACATAACTAAACTATAATACAGAAGAAACATAAACATATAAGCTAGTATATGCTATTTGCCCAATAGATGCAGTATAGATTATGTACCACAGATGTTAAAAATAGGACAGTTTCAGTACCTGGGTTAGTGATGGAGTGCTTGATGAAAGAGACCCTAGACCATGACTTTAGACAGGTCTTAGAGGATGAAAGGTAGACTTAGACAGAAGGGAAGGAAATGCACCTGACCTGTTAGAGAAGGGAGAGAAGTCTAGAAAGCAAACGTTTTATTTGTCTAAAATCACAGGCTAGGTGACCCCAGAGTAAAACCCCATCCAGATAAATTTTTAACTTGTGAAAAGGACTTAAGGAAACCTTCAGCACGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCAACAACTGCTCTTCCGAAGGTCCTGAGTTCAAATTCCAGCAACCACATGGTGGCTCACAACCATCTATAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAGCTACAGTGTACTCACATATAATAAATAAATCTGTAAAAAAAAAATAAAAAGAAAAGTGTCAGCAGTATATAGGAACCCACCACCAACAGAAAGCCGATCCAAAGGGAACGACCAGGGGGCAAGGTCTAAGCCCCATCAAGCAGCAGAACTTGGCAGCTTTGGCCCCGTGGTTCTGACTTTAAGGTTCTACGAGAGGGGCTGTAGAATCCCGCCTTAGCCAGGGAAAGCTGCTGAGACTCAGTGTGTCAGCAGCGTCCCTTCTGTATAGTGAGAAACAGCAACAAAACCTAAACCAAGTGCTTGTTGTACAAGCGTGAGGACCTGAGTTCAGGCCTCCAGAACCCATGGGAATAAAATCAAAATCATTAAAAATAAATCCTAGGGGTTGAGATGGCTCAACAGGGAACCTGCATTGGCAGCTAATGATCTGAGTTTGATTTCTGGGACCAACATGGTGGAAGGAAAGAACCAACTCCTCCTGCAAGTTGTCCTTTAGCCTACCACATACATATATATGCTTAAGTACATGTTCACATACATGCACAAGCATGATACATTTAAAAAAATATATATAGGTATAATAGTATGAGTTAGGTGTAATATTGTGAACTTACAGCCCCCATGCTGGAGGAGGGGGCAAAGACAGGTGGATCCTGGAGACTGGATGGTCAGATAGTCTAGCTGACACAGCAAGGTTTAGTTTCAGTTAAATACCCTGTCAAAAAAAAGAGAGAACAATGGAGAAAGACATTGACCTCTAGCTTCTACACTGGATACACACATACACACACATCAAACAGAATAATTAGTTACTATCAGTTTGTGATAATTAGCCATTTTCCTATATTCAGGTTAGAGAAGCATACTCAATTGAATGTTCATAAAATAGACAGGTGGCTAATATGAAGTACAGTACAGCAGCAGAAAATTCAGAGATGTATGTGATCTTTCTTGATGGGCCTTACACATGGTTAGCAGGTACTCTACCACACAGCTACAGCCTCATTCTGTATGACTTTCTTCTTAAAGCAATAAGTAAGCAAAATATTGGAGAGGAGTTATTTTTGTTTTTGTTTTTGTTTTTGTTTTTTCGAGACAGTTTCTCTGTGCAGCCTTGGCTCTTCTGAAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGCATTAAAAGTGTGTGCCACCACTTCCCGGCTTGGAGAGGAGTTATTATGTAAGAATTAAGATGACTAAAATTTCTTGAGACCATTGTGACCAAAGAAGTTATGATAGCTTTGACATCTTACATTAGTGATACTCGGTGACAAACTTTGATATATGATCACTGTTTAAGTCCTGGAAATGTTGAATAAGATAGAACCAGGTGGGTGCTTCCAGCTGTTAATCTGGGATAGGTAGATTTCCAAGGCTGCTTAGTATAAAGGTGAGTCATTTAGGAAGATTTAGAAATTTCTGCTGAAACAGATGTAATGTGTCTGCAGGTAAAAAAACAAAGGAGTTAGTGGGGTGGCAGTACAATTGTACTAAAGTCTAGGAAGCAGCAAAGCCTGAGTGGCTTGTGCCTATGTCTGCATAGCTTCTGTCTGTTAGGCCTGTGCCTATGTCTGCATAGCTTCTGACTGTTAGGCCTGTGCCTATGTTTGCATAGCTTCTGTCTGTTAGGTTCATGCCCTACCACCATAGACAGCCAAAACCAAGACAGAACTAGAGTCAGAAAACTTGAGGCCCTGGCTTTAATTTTAGTTTTAAATTTGTGTTACATAGTATAAAACAGGTGTTTATCTCTATGTCCATGCATCACATGCATGCCTGATGCCCACAGAGCCAGACGAGGACATCAGGTCCTCTACAACTGCATTATGAACAGTGGGTGCTCTGATTGAAGAGTAGCCATTTCCCCAGCCTCTGAACTACACACGGCTGTGAGCCACCATGTGGGTGCTGGGGATCAAACCTGGCTCCTCCAAAAGCAGTAGCAGGCTTCTTTAGCACACACTGGTTTTTCTATCTAAATCATCCAAACAGCCCGTTCCTATCTCCTTTAGCAGACTCAATGCAAAATTGAGAACCCAGAATTACTCATTGTAAAGAAGTTGCCACTGAGGTGAAACCTTGTGTTTCAGACCTTCTCTCTTACCTGCTTTCCCACTTCCCTTTCGGAGTACAAGTCTGTCTGTTGACTCTGGAGAATTTGAAAATGCAGTCCTTTGTGTGCTCACATTTCATGTCCTGAAATCAAGGAAGCCACCAGGTAAAAAGTTTCCCTCAAGACACTTGGCTCTCAGGTTGCAGGCACTGAAGCTGCAGAGGGAAGCTGTGTAAACACACAGGTCCTTTCCTTTCTGAGAAAATGGGGGGTGGGGGGGAGTGGGATGGAACTGCTGTTCCCCACATAGACAGCACTACTCAGAGTGCCAGCTGGGAAGGAATCACGGTGTGCCCCCCTCACCATATATCCTCTCCACCACCCCCACCCCCACCCCACACTGCTGCTTTTTCTGAACAGACATCTGCTCACTTGGAGAATATGTTCAACTGGGTAATTTCAGGAAGCCCAAACTTGCATTTATTAAACTATATTAAGGACCCAAAGGGAAAAAGAGCAAAATCTTGGTCCTTTGAAGACTTTTAACTTGGTCTTTCCAGCTTTTTTCAAATGGGCTTTCACTGTTCTTCACTGGTTGTTCTTCACTGGTCTGTGAATCCCTAGGCAAAAGTGAGATAAACACTCTGCATTTCATACCAAATTTAAAGAGAGAGAGAAGGAGAAAGAAAAGAGTGCCTGGGGTTTATTGTGGAACCTGGCTATTGATAGGCAGATAAATGCCCACATTTAATAAGAAGGTGACCCTACATATCTGAGAGCTAGAGAATTTTAACTTAATCTAACAGTCTCAAGATAAAGTAATAGTTTTACATTATAAAAATAGGTTATTCACAGGGCTAGAGAAGTGGCTCAGTGGTTAGAGCACTGGCTGCCCTTCCAGAAGACCTGGGTTCAGTTCCCAGCACCCACCACATGGAAGCTCACAACTGTCTGTAACTCGAATTCCAGGGAATATGTCACTCTCACATGTAGGCAAAGTATAAATGCACCAACATGTACATTTCTTTCTTTTTTTTTTCTTTTTTCTTTTTTTTTCAAGACTGGGTTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTAACATGTTAATGTCTTACAACCTTACAACTTTTGTTTTGTGTATGGGGTAGAGAGGGAGGGCATGTTGTAGCATATACATGACAGCTGCCAAGTGTGGGTCCTCTCCTTCAACCATGTGGGTTCCAGGAACTGAACTCAGGAATGGAGGAAAGTGCCTCTATCCACTGAGCCATCTCATCAGCTCTAGTGAGATATTTCTTAGCAGCTTTCCCTACCTTCTCTCTAAAGGATAATTCTTGACAGGTAGATTTGGAGATTAGATAAAAATAACTACCGGACAAATCATTTACTTTTGTTAGGAAGTTTGATAAAATCACCTTTAAGATTTAAAAATAAATATATATTGTTCATGTTGCTATTTAGAATAGGAACAGCCTTAAAGGATAATATTTGTTTTAGGCTTTTCCATAGTCAAGAATAGAATAAAAGAGTAGTGGGGTAGTGTTTCTGCACTGCTAAAAAAATAATGTATTTCAAGTTCCTTAGCTGAGAATACCAAAAAGAATCTTAGTTAGGTAACAGTGAAGGGACTCTATATTCTGTTCTAGAAAGTTCTAAATAGTTAACTTAATAGAATTTTCAGTTCATGTTGATAAAGATGAAACTGAATTACTGGCTCCTTTAGAAAGATTCATCTGCTTTTAGATATCTTTTAAAATTCAATTTAATTTTATGTGTATGGGTGTTTTGCCTTACATACCTGGCACCCATAGAGGCAGGAGAGGTGGGTATTGAATCTCTTGTAATCAGAGCTTACAGATAGTTTTGAGCCACCATGTGGGTCCTGGGAATCAAACCTGGGTCCTCTGGCAGAGGTGTCAGTGCTCTTAACCACCAAGCCATCTCTACCTTCCTTTAGATATCTGTCCCCTGGTGCAGTGTGACAGGGAACATTTTTATTGTTCATTTCTGGCATGTTATAGATCCAGCTCAGTTCCTCACAGACCTGAAGTGTTACGGATGAGAATCACCGACTGACTTCTTTCCGTAGTGCCTGGTCTGTCTGTGGCCCTTAGGTCCAGGACCATGAGCCAGTGTAGAAGATTTCACTATTGGAGCTGGCCGTGGCTTTGCTGGTTCAGTTGGGATCCGCTGGGAAGGTTAAACACTGTGCAGAGGAGCATGAGGACCACTGTACCCCTTCCCTTTGCCTTCCTGATAGGATATTGTCTTAGTAACCTAGAGCCCACAGGTTGCCTTAGGAATGGGGAACACAGGCTGGTGCACACCTTCAGTCCCACCACTCAGGAGGAAGAGGTGGGTATCTACCTGTGAATAGTCAAGCCTAGCCTGCCCTACGTAATGAATTGCAGGCCAGCCAGAGCTACGTAGAGATAACTGGTCTAAAAAAAGAAAAAGACAAACAATAAAAATGTGAACATGGTTTTAAAGCAACTAATTTTTCTTTTTCTTGAGGTCTATATACCTAGAAAAACATTCTAAGCCTCTCCACCTCCATTATTGCCACAGGATAAGTTTGTCACAATGTCAGTTTCTCTAATCTAGGCATAGTGACTCATGACAGTGCTATCAGACCGTCGTCTTTTTTTCCTCTTGTCATATTGTGGCCTTGAAAACATTTTGATACTTGAGTTGTTGCATGATATGAAGATACTGCAATACTGTGATGAGAGCCAGTCTACCACAAAGACACACGTATTTGTTGCAACAGACCTGAAAGCCCTGTCACATCCAATTCGTACCTCTGCTTCTAGTGCATGGGAAGTCGGGACTTTGGAGGATAGGGTTATAGCTGAGGACCAAAAGCTAAGCACGAGACTGTAGGCTTTAACCCCTAACCCAAGAGAAAGGTCAGCAAGAGCCCAGGGCTGGAGAGATGGCTCGGGAGTTGTCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGCTCTCTTCTGGCCTGCAGGCATACATATAGGCAGAATGCTGTATACATAATAAATAAATCTTTAAAAACAAAAAAACAAAAACTGGAGCCCAGAAAAGACATTATAGTTACATAGGCCCCAATACTTGGTTTCACCATAGACCTTTGTTTTCATCCATTTTTAGAAAGTGATTTATGTTCAATTATGTGTTTATAGGCTTACGTTCACGTGAGTCAGGTCCTTGTGGAGGCCAGAAACATATTCCCTGGAGCAGGAGCTATAGGCTGGGAGCCTCTGACATGGGGGCTGGAAACCACACTTAGCAAGAGCAATACTATACACACTACTGCTGAGCCACCCCTCCATCACCTTTGGCTATCTTAATGACACACAGATAGTGTGGGGATATGGTGGGTCATAGGCAGTAAGAATACATACCGTATAATCAAGTGAGGGACCAGATGCTAGCGAGCTACAGTGCGTGTGCAGCATCAGAGCTGAGTGCAGTCCCCAGAACCACAGACCTGTCCACTGTCCTCCATAGGTACACTGTGGTACAGCTATACCTCCCCACACACAGGTAAGAAAAAGTTAAAATGTAAAAAGAGAAAGAATTAAGGTGAGGACTATGTAGTACTTACAAAGCCTGGACGAGCACACAGTGACTGTAACTGGTAATATAGTAGCAGTATTTATGGATTATTTGCTTAATGAGGGAGCAAATAAATTACATGGAATTGAGCCCCATCAGTTTTTACACTGACCAAGGAACAGCTAACCTCCTTAACTTTGTACTCTGCCTCCCAAACCTTAGCCTGTCTACTGTCCTTTCCCTTTTCAGTAAGAAAGGGCCTGGTCTATAAACATTTCCCTGAGGTTTTTGATTATATTCCCCTGTTGACTGGGGAATTGGGCCTGTAGTTCCATTTTTTTTTTTTTTTAGATTATTTATTTTATGTATATGAGTACATTGTAGCTGTGTAGATGTTTGCAAGCATTCATGTGATTGTTGGGAATTGAATTTTAGGACCTTTGCTTGCTCTGATCAGCCCTGCTCACTGAAAGATTTATTTATTATTATAAATAAGTACACTATAGCTGTCATCAGACTCACCAGAAGAAGATGTCAGATCTCATAACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTACAGGGGAGCAGTCAGTGCTTGTACCACTGAGCCATCTTGCCAGCCCCCTGTAGTTCCGTTCTTACAATTTTTTTTTCCGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATTCGCCTGCTTCTGCCTCCCAAATGCTCAAATTAAAGGCATGTGCCACCATGCCTGGCTTGTAGTTCCATTCTTAATGAGATAAGAAAAACCTATCTCTCTTTTTCCCTCTATACCTAGCTCCTGGAAATTAAAAGGCTCTTGCAGGTTAACTCTTCAATAAGCATGGATCACAGGCAGAGTTCATGAAAAGTAAATGCAAAATCAGGGATGGCCACAAGGCCAGACTGACCCAAGGAGACAAGGCCGGATAAGTAGTATCTGTTGTAGGTTAGTCAGTGTGCTTCAGGGAGTTAGAATGTTATCCCCCCAACCCCTGCTCCTCCCCTCCTGCCTCCCATCTGTTACTTAGCCAGTCATGTTTATCATGGTAAATTTCAGTAGACATTAGAGCAAGGCAGGGGGAATGACCAGGACATAGATCACAGTTGTAGGAATGAGTGTTGAAGGAAGATGGGGTTGGAGATTTACTCAGGATTACAGAAGCGTTTGTGAAATGAATGAGATAGAGTGCATTAGTTAGGGCTTTGCTAACAGTAATTTCAGACAGATGGTTGCCCAGTGTCTTGCCATGCCTCCACTCCACTGCTCCTCCTCTTACCTCTTCCCGGTCCTAATGGAAGGTTGCAATGGAATTGAGATTCTGTAGTTAAATTTGTAAAGTAGTGATTAATCACCTTTCCAAGAGTCAAGAATAGGAAGATTTAAGATAAGCTAACTGCCCAGGAAGAGCAGCTACACCCACAAACTATTGGAGCTAGCAGCATTGCTTGGAGATAAATGGGTCCACACAGGGTACTTGCCTCTCACAGGGTACCTTTGAATGGTCTGAGCTTCCAACTAGTTTGCCTAGGCGTGTACTGCCCAACTGGTGGCCTGACTACTTTTTCTTGTGATCACCAG
Seq C2 exon
GGGATCAAGTCTTTGCTGGGTTAGAAGAACAAGCCCGACAGGCAATGATGAAAACCGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTACGAGATCAGGACTCCAGTAGCAGTGAGTTCTGCACCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728:ENSMUST00000212964:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types