MmuINT0179937 @ mm9
Intron Retention
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:112233311-112241787:+
Coord C1 exon
chr8:112233311-112233427
Coord A exon
chr8:112233428-112241661
Coord C2 exon
chr8:112241662-112241787
Length
8234 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CTTTTTCTTGTGATCACCAGGGG
3' ss Score
7.91
Exon sequences
Seq C1 exon
GTCAGCACCGTACGAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGGAAGAACGGAGCTTGGATATCAGGGAAACATGTCCCGTAGGAAACAGACAAACCCAAATAAAGTTCACT
Seq A exon
GTGAGTACTGGGCTTTGTCTTTTGAAACCTGGGTTGGAATGAAAGAGGAGCCTGAGTTTTGGGGGAGAGGCTCACACTCATTTGTTGGGGGGCGGGGGGAGAAAGGGCTAAAGATTCCCAGTATGGATTTGAAGTATAAAGTTACTAGAGTGCTGTCTAACTTGCCCAAGGGGTATGTATATGTGTTTGATTCATCTTTAATATGAACAATTACAGGAAACTTATTTTGTGAAAAAGTATATTAGGTGTCAAGGCTGTGAAGCAATAAAACATAACTAAACTATAATACAGAAGAAACATAAACATATAAGCTAGTATATGCTATTTGCCCAATAGATGCAGTATAGATTATGTACCACAGATGTTAAAAATAGGACAGTTTCAGTACCTGGGTTAGTGATGGAGTGCTTGATGAAAGAGACCCTAGACCATGACTTTAGACAGGTCTTAGAGGATGAAAGGTAGACTTAGACAGAAGGGAAGGAAATGCACCTGACCTGTTAGAGAAGGGAGAGAAGTCTAGAAAGCAAACGTTTTATTTGTCTAAAATCACAGGCTAGGTGACCCCAGAGTAAAACCCCATCCAGATAAATTTTTAACTTGTGAAAAGGACTTAAGGAAACCTTCAGCACGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCAACAACTGCTCTTCCGAAGGTCCTGAGTTCAAATTCCAGCAACCACATGGTGGCTCACAACCATCTATAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAGCTACAGTGTACTCACATATAATAAATAAATCTGTAAAAAAAAAATAAAAAGAAAAGTGTCAGCAGTATATAGGAACCCACCACCAACAGAAAGCCGATCCAAAGGGAACGACCAGGGGGCAAGGTCTAAGCCCCATCAAGCAGCAGAACTTGGCAGCTTTGGCCCCGTGGTTCTGACTTTAAGGTTCTACGAGAGGGGCTGTAGAATCCCGCCTTAGCCAGGGAAAGCTGCTGAGACTCAGTGTGTCAGCAGCGTCCCTTCTGTATAGTGAGAAACAGCAACAAAACCTAAACCAAGTGCTTGTTGTACAAGCGTGAGGACCTGAGTTCAGGCCTCCAGAACCCATGGGAATAAAATCAAAATCATTAAAAATAAATCCTAGGGGTTGAGATGGCTCAACAGGGAACCTGCATTGGCAGCTAATGATCTGAGTTTGATTTCTGGGACCAACATGGTGGAAGGAAAGAACCAACTCCTCCTGCAAGTTGTCCTTTAGCCTACCACATACATATATATGCTTAAGTACATGTTCACATACATGCACAAGCATGATACATTTAAAAAAATATATATAGGTATAATAGTATGAGTTAGGTGTAATATTGTGAACTTACAGCCCCCATGCTGGAGGAGGGGGCAAAGACAGGTGGATCCTGGAGACTGGATGGTCAGATAGTCTAGCTGACACAGCAAGGTTTAGTTTCAGTTAAATACCCTGTCAAAAAAAAGAGAGAACAATGGAGAAAGACATTGACCTCTAGCTTCTACACTGGATACACACATACACACACATCAAACAGAATAATTAGTTACTATCAGTTTGTGATAATTAGCCATTTTCCTATATTCAGGTTAGAGAAGCATACTCAATTGAATGTTCATAAAATAGACAGGTGGCTAATATGAAGTACAGTACAGCAGCAGAAAATTCAGAGATGTATGTGATCTTTCTTGATGGGCCTTACACATGGTTAGCAGGTACTCTACCACACAGCTACAGCCTCATTCTGTATGACTTTCTTCTTAAAGCAATAAGTAAGCAAAATATTGGAGAGGAGTTATTTTTGTTTTTGTTTTTGTTTTTGTTTTTTCGAGACAGTTTCTCTGTGCAGCCTTGGCTCTTCTGAAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGCATTAAAAGTGTGTGCCACCACTTCCCGGCTTGGAGAGGAGTTATTATGTAAGAATTAAGATGACTAAAATTTCTTGAGACCATTGTGACCAAAGAAGTTATGATAGCTTTGACATCTTACATTAGTGATACTCGGTGACAAACTTTGATATATGATCACTGTTTAAGTCCTGGAAATGTTGAATAAGATAGAACCAGGTGGGTGCTTCCAGCTGTTAATCTGGGATAGGTAGATTTCCAAGGCTGCTTAGTATAAAGGTGAGTCATTTAGGAAGATTTAGAAATTTCTGCTGAAACAGATGTAATGTGTCTGCAGGTAAAAAAACAAAGGAGTTAGTGGGGTGGCAGTACAATTGTACTAAAGTCTAGGAAGCAGCAAAGCCTGAGTGGCTTGTGCCTATGTCTGCATAGCTTCTGTCTGTTAGGCCTGTGCCTATGTCTGCATAGCTTCTGACTGTTAGGCCTGTGCCTATGTTTGCATAGCTTCTGTCTGTTAGGTTCATGCCCTACCACCATAGACAGCCAAAACCAAGACAGAACTAGAGTCAGAAAACTTGAGGCCCTGGCTTTAATTTTAGTTTTAAATTTGTGTTACATAGTATAAAACAGGTGTTTATCTCTATGTCCATGCATCACATGCATGCCTGATGCCCACAGAGCCAGACGAGGACATCAGGTCCTCTACAACTGCATTATGAACAGTGGGTGCTCTGATTGAAGAGTAGCCATTTCCCCAGCCTCTGAACTACACACGGCTGTGAGCCACCATGTGGGTGCTGGGGATCAAACCTGGCTCCTCCAAAAGCAGTAGCAGGCTTCTTTAGCACACACTGGTTTTTCTATCTAAATCATCCAAACAGCCCGTTCCTATCTCCTTTAGCAGACTCAATGCAAAATTGAGAACCCAGAATTACTCATTGTAAAGAAGTTGCCACTGAGGTGAAACCTTGTGTTTCAGACCTTCTCTCTTACCTGCTTTCCCACTTCCCTTTCGGAGTACAAGTCTGTCTGTTGACTCTGGAGAATTTGAAAATGCAGTCCTTTGTGTGCTCACATTTCATGTCCTGAAATCAAGGAAGCCACCAGGTAAAAAGTTTCCCTCAAGACACTTGGCTCTCAGGTTGCAGGCACTGAAGCTGCAGAGGGAAGCTGTGTAAACACACAGGTCCTTTCCTTTCTGAGAAAATGGGGGGTGGGGGGGAGTGGGATGGAACTGCTGTTCCCCACATAGACAGCACTACTCAGAGTGCCAGCTGGGAAGGAATCACGGTGTGCCCCCCTCACCATATATCCTCTCCACCACCCCCACCCCCACCCCACACTGCTGCTTTTTCTGAACAGACATCTGCTCACTTGGAGAATATGTTCAACTGGGTAATTTCAGGAAGCCCAAACTTGCATTTATTAAACTATATTAAGGACCCAAAGGGAAAAAGAGCAAAATCTTGGTCCTTTGAAGACTTTTAACTTGGTCTTTCCAGCTTTTTTCAAATGGGCTTTCACTGTTCTTCACTGGTTGTTCTTCACTGGTCTGTGAATCCCTAGGCAAAAGTGAGATAAACACTCTGCATTTCATACCAAATTTAAAGAGAGAGAGAAGGAGAAAGAAAAGAGTGCCTGGGGTTTATTGTGGAACCTGGCTATTGATAGGCAGATAAATGCCCACATTTAATAAGAAGGTGACCCTACATATCTGAGAGCTAGAGAATTTTAACTTAATCTAACAGTCTCAAGATAAAGTAATAGTTTTACATTATAAAAATAGGTTATTCACAGGGCTAGAGAAGTGGCTCAGTGGTTAGAGCACTGGCTGCCCTTCCAGAAGACCTGGGTTCAGTTCCCAGCACCCACCACATGGAAGCTCACAACTGTCTGTAACTCGAATTCCAGGGAATATGTCACTCTCACATGTAGGCAAAGTATAAATGCACCAACATGTACATTTCTTTCTTTTTTTTTTCTTTTTTCTTTTTTTTTCAAGACTGGGTTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTAACATGTTAATGTCTTACAACCTTACAACTTTTGTTTTGTGTATGGGGTAGAGAGGGAGGGCATGTTGTAGCATATACATGACAGCTGCCAAGTGTGGGTCCTCTCCTTCAACCATGTGGGTTCCAGGAACTGAACTCAGGAATGGAGGAAAGTGCCTCTATCCACTGAGCCATCTCATCAGCTCTAGTGAGATATTTCTTAGCAGCTTTCCCTACCTTCTCTCTAAAGGATAATTCTTGACAGGTAGATTTGGAGATTAGATAAAAATAACTACCGGACAAATCATTTACTTTTGTTAGGAAGTTTGATAAAATCACCTTTAAGATTTAAAAATAAATATATATTGTTCATGTTGCTATTTAGAATAGGAACAGCCTTAAAGGATAATATTTGTTTTAGGCTTTTCCATAGTCAAGAATAGAATAAAAGAGTAGTGGGGTAGTGTTTCTGCACTGCTAAAAAAATAATGTATTTCAAGTTCCTTAGCTGAGAATACCAAAAAGAATCTTAGTTAGGTAACAGTGAAGGGACTCTATATTCTGTTCTAGAAAGTTCTAAATAGTTAACTTAATAGAATTTTCAGTTCATGTTGATAAAGATGAAACTGAATTACTGGCTCCTTTAGAAAGATTCATCTGCTTTTAGATATCTTTTAAAATTCAATTTAATTTTATGTGTATGGGTGTTTTGCCTTACATACCTGGCACCCATAGAGGCAGGAGAGGTGGGTATTGAATCTCTTGTAATCAGAGCTTACAGATAGTTTTGAGCCACCATGTGGGTCCTGGGAATCAAACCTGGGTCCTCTGGCAGAGGTGTCAGTGCTCTTAACCACCAAGCCATCTCTACCTTCCTTTAGATATCTGTCCCCTGGTGCAGTGTGACAGGGAACATTTTTATTGTTCATTTCTGGCATGTTATAGATCCAGCTCAGTTCCTCACAGACCTGAAGTGTTACGGATGAGAATCACCGACTGACTTCTTTCCGTAGTGCCTGGTCTGTCTGTGGCCCTTAGGTCCAGGACCATGAGCCAGTGTAGAAGATTTCACTATTGGAGCTGGCCGTGGCTTTGCTGGTTCAGTTGGGATCCGCTGGGAAGGTTAAACACTGTGCAGAGGAGCATGAGGACCACTGTACCCCTTCCCTTTGCCTTCCTGATAGGATATTGTCTTAGTAACCTAGAGCCCACAGGTTGCCTTAGGAATGGGGAACACAGGCTGGTGCACACCTTCAGTCCCACCACTCAGGAGGAAGAGGTGGGTATCTACCTGTGAATAGTCAAGCCTAGCCTGCCCTACGTAATGAATTGCAGGCCAGCCAGAGCTACGTAGAGATAACTGGTCTAAAAAAAGAAAAAGACAAACAATAAAAATGTGAACATGGTTTTAAAGCAACTAATTTTTCTTTTTCTTGAGGTCTATATACCTAGAAAAACATTCTAAGCCTCTCCACCTCCATTATTGCCACAGGATAAGTTTGTCACAATGTCAGTTTCTCTAATCTAGGCATAGTGACTCATGACAGTGCTATCAGACCGTCGTCTTTTTTTCCTCTTGTCATATTGTGGCCTTGAAAACATTTTGATACTTGAGTTGTTGCATGATATGAAGATACTGCAATACTGTGATGAGAGCCAGTCTACCACAAAGACACACGTATTTGTTGCAACAGACCTGAAAGCCCTGTCACATCCAATTCGTACCTCTGCTTCTAGTGCATGGGAAGTCGGGACTTTGGAGGATAGGGTTATAGCTGAGGACCAAAAGCTAAGCACGAGACTGTAGGCTTTAACCCCTAACCCAAGAGAAAGGTCAGCAAGAGCCCAGGGCTGGAGAGATGGCTCGGGAGTTGTCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGCTCTCTTCTGGCCTGCAGGCATACATATAGGCAGAATGCTGTATACATAATAAATAAATCTTTAAAAACAAAAAAACAAAAACTGGAGCCCAGAAAAGACATTATAGTTACATAGGCCCCAATACTTGGTTTCACCATAGACCTTTGTTTTCATCCATTTTTAGAAAGTGATTTATGTTCAATTATGTGTTTATAGGCTTACGTTCACGTGAGTCAGGTCCTTGTGGAGGCCAGAAACATATTCCCTGGAGCAGGAGCTATAGGCTGGGAGCCTCTGACATGGGGGCTGGAAACCACACTTAGCAAGAGCAATACTATACACACTACTGCTGAGCCACCCCTCCATCACCTTTGGCTATCTTAATGACACACAGATAGTGTGGGGATATGGTGGGTCATAGGCAGTAAGAATACATACCGTATAATCAAGTGAGGGACCAGATGCTAGCGAGCTACAGTGCGTGTGCAGCATCAGAGCTGAGTGCAGTCCCCAGAACCACAGACCTGTCCACTGTCCTCCATAGGTACACTGTGGTACAGCTATACCTCCCCACACACAGGTAAGAAAAAGTTAAAATGTAAAAAGAGAAAGAATTAAGGTGAGGACTATGTAGTACTTACAAAGCCTGGACGAGCACACAGTGACTGTAACTGGTAATATAGTAGCAGTATTTATGGATTATTTGCTTAATGAGGGAGCAAATAAATTACATGGAATTGAGCCCCATCAGTTTTTACACTGACCAAGGAACAGCTAACCTCCTTAACTTTGTACTCTGCCTCCCAAACCTTAGCCTGTCTACTGTCCTTTCCCTTTTCAGTAAGAAAGGGCCTGGTCTATAAACATTTCCCTGAGGTTTTTGATTATATTCCCCTGTTGACTGGGGAATTGGGCCTGTAGTTCCATTTTTTTTTTTTTTTAGATTATTTATTTTATGTATATGAGTACATTGTAGCTGTGTAGATGTTTGCAAGCATTCATGTGATTGTTGGGAATTGAATTTTAGGACCTTTGCTTGCTCTGATCAGCCCTGCTCACTGAAAGATTTATTTATTATTATAAATAAGTACACTATAGCTGTCATCAGACTCACCAGAAGAAGATGTCAGATCTCATAACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTACAGGGGAGCAGTCAGTGCTTGTACCACTGAGCCATCTTGCCAGCCCCCTGTAGTTCCGTTCTTACAATTTTTTTTTCCGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATTCGCCTGCTTCTGCCTCCCAAATGCTCAAATTAAAGGCATGTGCCACCATGCCTGGCTTGTAGTTCCATTCTTAATGAGATAAGAAAAACCTATCTCTCTTTTTCCCTCTATACCTAGCTCCTGGAAATTAAAAGGCTCTTGCAGGTTAACTCTTCAATAAGCATGGATCACAGGCAGAGTTCATGAAAAGTAAATGCAAAATCAGGGATGGCCACAAGGCCAGACTGACCCAAGGAGACAAGGCCGGATAAGTAGTATCTGTTGTAGGTTAGTCAGTGTGCTTCAGGGAGTTAGAATGTTATCCCCCCAACCCCTGCTCCTCCCCTCCTGCCTCCCATCTGTTACTTAGCCAGTCATGTTTATCATGGTAAATTTCAGTAGACATTAGAGCAAGGCAGGGGGAATGACCAGGACATAGATCACAGTTGTAGGAATGAGTGTTGAAGGAAGATGGGGTTGGAGATTTACTCAGGATTACAGAAGCGTTTGTGAAATGAATGAGATAGAGTGCATTAGTTAGGGCTTTGCTAACAGTAATTTCAGACAGATGGTTGCCCAGTGTCTTGCCATGCCTCCACTCCACTGCTCCTCCTCTTACCTCTTCCCGGTCCTAATGGAAGGTTGCAATGGAATTGAGATTCTGTAGTTAAATTTGTAAAGTAGTGATTAATCACCTTTCCAAGAGTCAAGAATAGGAAGATTTAAGATAAGCTAACTGCCCAGGAAGAGCAGCTACACCCACAAACTATTGGAGCTAGCAGCATTGCTTGGAGATAAATGGGTCCACACAGGGTACTTGCCTCTCACAGGGTACCTTTGAATGGTCTGAGCTTCCAACTAGTTTGCCTAGGCGTGTACTGCCCAACTGGTGGCCTGACTACTTTTTCTTGTGATCACCAG
Seq C2 exon
GGGATCAAGTCTTTGCTGGGTTAGAAGAACAAGCCCGACAGGCAATGATGAAAACCGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTACGAGATCAGGACTCCAGTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-Zfp821:NM_029468:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: