GgaINT0024978 @ galGal3
Intron Retention
Gene
ENSGALG00000001160 | DOK4
Description
NA
Coordinates
chr11:549595-550331:+
Coord C1 exon
chr11:549595-549784
Coord A exon
chr11:549785-550192
Coord C2 exon
chr11:550193-550331
Length
408 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
CCTCTGCTCTGACCCCATAGGAT
3' ss Score
10.98
Exon sequences
Seq C1 exon
ACCGGTTCAACGTGTTCCTCCTCCCCTGCCCCAACCTGGACGTGTACGGCGAGTGCAAGCTGCAGATCACCCACGAAAACATCTACCTCTGGGACACGCACAACCCGCGCCTCAAGCTGCTCTCCTGGCCCCTCTGCTCTCTGCGCCGCTACGGCCGCGACGCCACGCGCTTCACCTTCGAGGCGGGACG
Seq A exon
GTGAGACGGGGCCGGGCGCACCCAGCGTCCCCCCCAGGCCTGACGCCGGGCCGAGGGCTGCCATAGGGTGCCCCATAGCTGTAGGGCCGCTCCGGGCCCTTCCCGGGGCCACCCACGCGCCCAGCCCTGCAGGAGCCATGGGGGGAGCTGCTTCGGCTCCGCCAGGCCTGGCTATATTAGGAACTTTCCTGCTAATTACCAGCTCCAGAGGGGAAGAAACATGATCTCGCCTTTCATCCCGGCCCTATGGCTTCCGCTGACTCACCATGCCCGGCGCGAGGGGAGGGGGCGGCAGGGCCGGCCGCGGGATGATGCTGGCTGGGAAGGGAACCCTTTGGTGCCGGGGGGCCGTGCTGCGACCTGGCCCGCCCCGTGCCGCTGTAATGCCCCTCTGCTCTGACCCCATAG
Seq C2 exon
GATGTGCGACGCGGGAGAGGGCCTCTACACCTTCCAGACGCAGGAAGGCGAGCAGATCTACCAGCGCGTGCACAGCGCAACGCTGGCCATCGCCGAGCAGCACAAGCGGGTCCTGCTGGAGATGGAGAAGAACGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001160:ENSGALT00000001745:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(64.3=100)
A:
NA
C2:
PF0217412=IRS=PD(32.7=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAACGTGTTCCTCCTCC
R:
CCTGACGTTCTTCTCCATCTCC
Band lengths:
326-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]