RnoINT0050522 @ rn6
Intron Retention
Gene
ENSRNOG00000015679 | Dok4
Description
docking protein 4 [Source:RGD Symbol;Acc:1310084]
Coordinates
chr19:10572402-10573356:+
Coord C1 exon
chr19:10572402-10572591
Coord A exon
chr19:10572592-10573217
Coord C2 exon
chr19:10573218-10573356
Length
626 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
CCTTGCTACCTTGTCCTTAGGAT
3' ss Score
10.28
Exon sequences
Seq C1 exon
ATCGCTTCAATGTCTTCCTGTTACCCTGCCCTAACCTGGACGTGTATGGCGAGTGCAAACTGCAGATCACTCACGAGAACATCTACCTCTGGGACATACACAACCCCCGCGTGAAGCTCGTCTCGTGGCCCCTCTGCTCTTTGCGCCGTTATGGCCGAGATGCCACACGATTTACCTTTGAGGCGGGCAG
Seq A exon
GTAGTACCCTCTTTCTTACCATCCTGTCCCACTGTGGCCATTATGGAGCCTGCTCTCGGCATGGCGTCAGGCATGTTCATCAGCACGGCAGCCCAGGGGGGATATAATGTTTCAATTTTACAGATGAGGAACTCAAGGCCAGAAGAAGTAATTAGCTTATAACAGGCAGGTCAAACGAAGCTCCCTAGCTGAGTCACTGCCAGGGGTGACACTTTCTGGCTTTATGATTGTAGCCTCAGTACCAGTTCCCTATAGGGGGTGAAAAAGTGCCCAGCCTGACAGAGTGATGTTATAGCGAGAGAAGGCCCTTGCTGGGACTCCAGCAGTCTGCTTAAACTTCAGCTCCCCACCATCCTCTGTGTAACCTTGGCAGAGCAACTCCTCTACGGTAAAATGTAGAGGAAAACGAATAGGCTAATTTCTGCGAAGCTTTCAAATCTCCACTGGGTATGTGGTAACTACTGCTCAACCCATGTGTACTGTGACCAAGTCCCCAGATCACCATAGCCATCCTCTCCCTGAAGACCTTCATACAACCGCAGCTGGTATTTAGAACTTGGTGCGTATACACGCACGCACCGAGTGAAATTCCTGACACCTTGTCCTCCTTGCTACCTTGTCCTTAG
Seq C2 exon
GATGTGTGACGCTGGGGAAGGACTCTATACCTTTCAGACACAGGAGGGGGAGCAGATTTACCAGCGGGTTCACAGTGCCACCCTGGCCATCGCTGAGCAGCACAAGCGGGTCCTGCTGGAAATGGAGAAGAATGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015679:ENSRNOT00000021037:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(64.3=100)
A:
NA
C2:
PF0217412=IRS=PD(32.7=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTCAATGTCTTCCTGTTACC
R:
TCACATTCTTCTCCATTTCCAGCA
Band lengths:
326-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]