HsaINT0051472 @ hg19
Intron Retention
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:19868]
Coordinates
chr16:57507813-57508894:-
Coord C1 exon
chr16:57508705-57508894
Coord A exon
chr16:57507952-57508704
Coord C2 exon
chr16:57507813-57507951
Length
753 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
3' ss Seq
CCTCTGTGCTGTGTCCCCAGGAT
3' ss Score
11.02
Exon sequences
Seq C1 exon
ATCGCTTCAATGTCTTCCTGCTGCCCTGCCCCAACCTGGACGTGTATGGCGAGTGCAAGCTGCAGATCACCCACGAGAACATCTACCTCTGGGACATCCACAACCCCCGTGTGAAGCTCGTCTCGTGGCCCCTCTGCTCACTGCGCCGCTATGGCCGGGATGCCACACGCTTTACCTTCGAGGCTGGCCG
Seq A exon
GTAGGACCCTCTCGCCTCCCAGCCCTGTCCTACTATGGTGTGATGGTGGCTGCCATTCACTCTGTGTTGGGCACTGTGCTAGGAGCTTGGTTTACTTATTGGCCTAGCAATCCCAAGGGGGAATGTAATGTTCCCATTTTACAGACGAAGAAATGAAATGGAGGCTTAGAGGAGTAACTTGCCCACAGCATGCAGGTCAAGTGAAGCTATTTACCAAAAATCATATACTACTTTGGCTTAAGTCAAATGCAGGTTCAGGCACTTACTACTTCTGTGACTGTGGATCTGAGTCTGGGTTTCGGGGATAATAAAGTACCTAACCTCCTAGAATTATAGTGAAGACTGGGTATCCCCTCACTTGAACTCTGGAGTCAGTCTGCCTAGACTGAAATTCCATATAATCCTCTGCAGAACCTTGGTTGAGTTACTTAGCTTCTGTATGCCTCAGTTTCCTCATCTATAAAATGGTTTGGGAAAATGCATAACAATGAGGAAACCATTAATGGTACAGAGACCAGAGGGAGGTGGTAGAGAAAACTGAATGGGTTAATTCTTATAATGCATTTCAAGCACCAGCTGGTATAGAATATGCTCAGCACATTTGCACCGTGTGGTCGGACCCCCAGACCACAGCCCTACCTGTCCTCCCGGCCTGGAATGCAACCACAACTTGCAGTTGCAAGAGAGCCTAACTAATCACATGCATGTCTGTGGTGGGTCCCCACCATCTTGCCCTCTGTGCTGTGTCCCCAG
Seq C2 exon
GATGTGTGATGCTGGGGAAGGACTCTATACCTTCCAGACACAAGAGGGGGAGCAGATTTACCAGCGCGTCCACAGTGCCACCCTGGCCATCGCAGAGCAGCACAAGCGGGTCCTGCTGGAAATGGAGAAGAACGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170-DOK4:NM_018110:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(64.3=100)
A:
NA
C2:
PF0217412=IRS=PD(32.7=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTCAATGTCTTCCTGCT
R:
TCACGTTCTTCTCCATTTCCAGC
Band lengths:
326-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)