GgaINT0027392 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:20328103-20328561:-
Coord C1 exon
chr10:20328355-20328561
Coord A exon
chr10:20328264-20328354
Coord C2 exon
chr10:20328103-20328263
Length
91 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ACTTTCCCTTGCTTTCCCAGAGC
3' ss Score
10.51
Exon sequences
Seq C1 exon
ATTATATGAAGGAATCTGTGTGCAGCTCCAGCACTTGTTCTCTGAACAGCAGTGAAAACCCATACGCCACCATTAAAGATCCCCCCATCTTAACATGCAAACACTCCGAGAGCAGCTACGTGGAAATGAAATCGCCTGGTCACAGGGACTCCCCATATTCAGAAATGCCCACTTCATCAACAGCCAACAAAAACATCTATGAAGTTG
Seq A exon
GTAAGTGGGAAGCTCTGCCTCACGGCTGTTAACAGCTGGGGTTTACCTTAGTGCTGCTGAGTACTGCAACCACTTTCCCTTGCTTTCCCAG
Seq C2 exon
AGCCCACCATCAGCGTGGTCCAAGATGCCCGTGCCCGGAGTGCCAGTTACCTCCAAAGTCCATATGACCTGCCTAGGAACAGTCACATTCCTAGTCACTACGACCTCCTCCCTGTAAGGCACAGCCCAACGCACGGGCCATCTTGGGACAAGCAGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631:ENSGALT00000012349:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=NA C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCACCATTAAAGATCCCCC
R:
CATCTTGGACCACGCTGATGG
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]