GgaINT0028471 @ galGal3
Intron Retention
Gene
ENSGALG00000007000 | NR2F2
Description
NA
Coordinates
chr10:17661350-17666133:+
Coord C1 exon
chr10:17661350-17661877
Coord A exon
chr10:17661878-17665649
Coord C2 exon
chr10:17665650-17666133
Length
3772 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTAATACACTTTCTTCTAGATG
3' ss Score
7.89
Exon sequences
Seq C1 exon
CGGTCCAGAGGGGCATAATGCCACCCACACAGCCAACTCACGGTCAGTTCGCCTTGACAAACGGGGACCCTCTCAACTGCCATTCCTACCTATCCGGATATATCTCCCTTCTTCTGAGAGCAGAGCCCTACCCCACCTCCCGCTTTGGCAGTCAGTGCATGCAACCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCAGCTCGGATGCTCTTCAGCGCGGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCCGACCTGCAGATCACCGACCAGGTGGCCCTGCTGCGGCTCACCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGTGCTCCATGCCGCTGCACGTGGCCCCGCTGCTGGCCGCCGCCGGCCTCCACGCCTCCCCCATGTCGGCCGACCGCGTCGTCGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCACGTCGACTCGGCCGAGTACAGCTGCCTCAAAGCCATCGTCCTCTTCACCTCAG
Seq A exon
GTGAGCGCTGGGAGCACCCGGGGAGGGGGGGGGAGGAGGGGACGTGGGGGGTGGCAGCTCCCACGCGCGTGGGGTGGGAGCGGCGCGGCCTGCCCCACTCTGTCCCCATAAACACTCACACGCATGGATATAAACACACGTATATATCCATCAAATTAAGTGGAGGCGGTGGAAACACGCGTGCACGCATGTTAACAATTTTTCCCGGTGATAGATGGTTCGAATTAACTGGCAGGAAAGTGCATTAACAGCGCCTTTGAAGTGCTCTGGTTGTAGCCTATAAGAATATAAAACATCTTCTATTATTATAACCTGCGAGGGGGAAATTTATTACGGCAAAGGCGAACGATGCGAGGGAAATGTAGGAAATGGAGCGAGAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCCCAGACCTGCAGATCACAGACCAGGTGGCCCTGCTCAGGCTGACCTGGAGCGAGTTGTTCGTGCTCAACGCCGCCCAGTGCTCCATGCCCCTCCACGTAGCCCCGCTGCTGGCAGCCGCCGGCCTCCACGCTTCGCCAATGTCTGCTGACCGAGTGGTCGCCTTTATGGACCACATACGAATCTTCCAAGAGCAAGTAGAAAAACTGAAAGCGTTGCATGTCGACTCCGCAGAATATAGCTGTTTAAAGGCCATAGTCCTCTTCACCTCAGGTAGGCAGCGTTTCTTTGCTCTCCCCTTCCTCCCCCTGCCCCTCCGAGAGGTGTTTGCTCTTTGCAAAGTGTTGCTGCCTTTGCCAGCCCCGCTGCCCTGCCAGGAGTGGGGCTGGGGGGCTACCCGCGGGGCCTCGGCTCTCAGCAGCCCCCCAGCGTGGGCTGCGGGGGGAAATAACCCATCACAACGATGAGAAATAGACGGAGAAGCGCACCCCGAGCCTCGCTGCGTCAGGCTGGGGAAGGGGGAAGAGGGGGCTCGGGGGGAGGCACCCATTCGCCACAAGAGACTGCGCTTTTCCCATTGAAAATAATATTTTATTTAACAGTCTAGCTCTGGGTTGTTGCATTTAATGACACGCATCCGAACAGCAGCAAAAATCTGTTTGATGTTGTTAAATACAAGGCGTCCTATCAGTGAAACCACTTTAAAAAGAGTATCATTTTATGGGCAGCCAGGAAGAGGGGGGGGGAGGGGGGGAAAGCCCTGCAGGATTAAAAATTGAATTAAAAAAAAAATAAAAAAACTTAAATGCGCATAGCTGAGTTTAAAATATGTTCCCTGCCATCCCATAAAATAAAATAAATCAACTTCCCAAAGAGCTGTCTCTGATTGAAACAGAACGTGGCAGCGAGCAGTTCTGTGTCATTGGAGCTAAGGGGAAAAGTTTGCATTTGTACCCAGCAGGAGCTGCAGAGTGCAGAGCGAGGAGAGGGTGCGGAGGGATCATTACCATAAGCAGTCGGGGACAGCAGGAAAAAGTCAGAGCAGAGGGCAGGAGCTGCGCTCCGCCGAGCAGTTCCGGGCTGGCACAACGCGAGGAGCGCAGCTCGGGGCGCTGCTGGGATCATCAAAGCGGAGGGGGGAAAAATATGTGTCAACTTTTGCTGCCTCGAAATAGTGCATGAGTTATAAAGCAATAATTGAGTGCGTTGTGAAATCTAATTAGCTTGCACTAGAGTTTAACCTGGGTGAGTAATAAACCTGATATTAACTCCGGAGGCTAAATATTTTTATTATTATTATTATTATTATTTTTAAATCTGCTCGCTAATTTGCGTAATACGTGATCTCAGATCGCTAACTTGAAGGCTGCAGCCCTGCAAGTTCGGGGACGGAGTTTAAAAATCCCTAGATTTCTTCTGTAGCTCATTGGGAAGCTTGGGAAAGTGGCCACGCGATAAACATATGAATGGAAGCAGGACCTGTAAAATAATTACTCATCGGAGTTTTTTAAAGCCTGATATCAGGAAACAGGAAAAAAAAATGTAGTTTATGTGGGAAAAGGAGGGCTCACAATCCGCTCCTTGTTGTGTTAAAGGGGGTCTGGGGAACGAAGTCATTTTCTGGACTTTGTCCAGGTTCTGGGTCGTGACCTAAACTTCCTTTTATATATTATTGCTTTACACATTAAAAAAAAAAAAAAGAAAAAAAAAAAGCCTTCTCCTCCCAACCCCCCCCCCCCTTCAACCACTCGTGCTGAGGTCCTGGGGTGACCCACGAGCATCCACTGGGGGGGTCCCGCGTGGGGCCGCTGCTCGTGGGGCTCTGTTTGGGGTCCGGGCGCATCTGGGGACGCCCCGTGGGTCCCCCACACAGCCCCTGGGCTGCGGCCGCCCCGAGGAGCGGAGCCGAAACCTCTCCTTTCTCCCCAAATCACTTTATTATGATGATGATTATTATTTTTAGCCTTCTGAGAAAACAATCGTCCGATCCTGTCGTAACTGTTTAATTTATTGCTATTTTCCAAATGTGAGGCCTGGCGTGTAAATTGCCTCCCAACGAGATAAACGCTCCTTCTTATCTCGATGCTGGGGAGATAGCCCCGTGCACAAGGAGGGCTCTGCACACAGCTCCCCAATAACAGCACTGATGGAAAGCAGATGCACAGGGATGCACACACACACTCGATTTGCTCCTGCCTCTTATTTATTTATTTTTTTTACACACACACACACACACACAGAAAGAAAAAGAAAAAAAAAATAGAAGAAAAACACAACAACTGGGTTCTAATGACTCGCAGAATATGCATGTGTTAGCCCTGTGCCTAGGAAAGCCACAGGGAGGTCAGGTCACAACCTGTGCTCTTTCAGCACAGACGTCTCTGATTTAAAGGGAAGTTATTGTATTTTAGCGTATCAGGAAAAAAAAAATGTCCAGACCCTATCAGGGAGTTTTCTTCTTGTAAGGGCCTTTAGGTTTAAAAAGAAGAAGAAGAGGAAGAAAAAAAAAAAAAAAAAAAGAGGGGGGAGTCGAGGGGGGGAAGAAAGAAAGAGAAAAGAAAAGAGGGGGGAAAAGAAACAGCTCAAATGAACAGAGAGATCACAGTTTGCATGGCTGCCTCTGAATAGGCTAAACTGACAAGATCAGTTTTAAAGGGCCACTTAAATCAGTTTCAAAGACTGAAGAAAAACGCGTTGTCTTCTCTGGGGGAGAATCTGTTGCTGGATCCGGGGCGCCATTTTTTGCGACTGGGCCGGTTTTTTAGCGTTATGATGATGATTTCCATCACTGCCGTCAGCACGCCTTCCCATCGCACGGTTAGGCTCCCCACGCTTCTTTTCCAAGTGGGGGAGATAGAGGGGCTCCCCCTCCCCTCGCCTCCCGCCCCGCCCCGGCCTTTCCCCGCACACCGGAGGTGGGGGGACCCGGGCAGCGCCCCCCAGCACACGGCCCCGCTCCTATTGCTGCGGAGCCCCTCCAGGAGGGAGAGGTGTGGAAAAGGACAGAGATTGGCCCTATGGGTGATACCCACGGAGACTGTCGGGGGGCGAGGTGATGGCGCACGATCCGCGCTTCTTTCTAGAGATTTAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAATCAAAATCAAAAAGAAAACTTTTTAATCTGATGATTGTTTTCTTTTTTTCTTTTCTTTCTTTTTTTTTTCCTTTCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACACTTTCTTCTAG
Seq C2 exon
ATGCCTGTGGTCTCTCTGATGTAGCCCATGTTGAAAGTTTACAGGAGAAGTCACAGTGTGCTTTGGAAGAGTATGTTAGGAGCCAGTATCCCAACCAGCCAACACGATTCGGGAAGCTATTACTACGTCTCCCCTCCCTTCGCACTGTCTCCTCTTCTGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATAGAAACCCTAATCAGGGATATGTTACTGTCTGGCAGCAGTTTTAACTGGCCTTACATGTCCATTCAATAAAATATTCGAGAGAGAGAGAGAGAGAGAGAGAGAAAATAAAAAGAAAAAGAAAATACAAATTGAGAAGGGAGATGAGAGTGAAAGGAAAGCAAATGACATTTGGGTTCTGGTTGTTTCTTAAATTTCCTTCTGCTAAGAAAGGATGTAAAAGGATGTTACAAAGTTTGCAAAGTGAAGACAGGGGAAAAAAATCATTAATGGACTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007000:ENSGALT00000023630:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]