MmuINT0110517 @ mm10
Intron Retention
Gene
ENSMUSG00000030551 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
Coordinates
chr7:70351944-70358290:-
Coord C1 exon
chr7:70357763-70358290
Coord A exon
chr7:70354932-70357762
Coord C2 exon
chr7:70351944-70354931
Length
2831 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTTTTAAACTTTCTTCCAGATG
3' ss Score
10.37
Exon sequences
Seq C1 exon
CTGTACAGAGAGGCAGGATGCCTCCTACCCAGCCTACCCACGGGCAGTTTGCCCTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCGGCCCAGTGCTCCATGCCCCTCCATGTCGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCTTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTATAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
Seq A exon
GTAGGAAGGAGACCTGTTCTCAGGTACCCAAGAACTCCCAGGGCAGAGTTAGGGACTTGGGGAAAAAAATGGCCAGCCCAACTTGCCTCTTAAAAGACCAAAGTATGGAGTGCACTTTGAGGTGGGAACATGATATATCTGCTGGCTTGTCATGGGGTGCAGAAGAATTCCCCATGCATCCTTATGTATGGAGACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATACAGGGCCTTAGGGCCTCTCAGGCCCCTTCCTCTCATGCAATAGCCAACCTAGAATGTACTCTGTTGCTCCTGCCTGAACCCAGGTCCTCTGGGCCTATTTGGCCCCCAGGGAATCTCTTCAAGTTCTGGGATTTTTTTTTCTTGGCACCCTGGCTGGGACCTCAGGAAAATAGCCCTGGGCATATTGCAGCCCTGGCATCATCTCTGTAGGAGAAACTTTGTCCCTGCAGGGAGAAAGTTTGCCTGCGAAGTCAGTAGGAGTTGGGGCTCCAGGCAGCTCCAACCTGAGAGCAGCAATTTTTAAAATCACAATCTCATTAAAAATAATGCAGACCGTCAGGAGGTGGGGGGTGCTGTCAGAATGGGACAGGAGAGGCTAAAGGACTACCATAATTCCAGAATGTCTGCAGGGGGTTGAAGGCTGGCCTCTGGCTTCCCCTATTCAGGCAAACACTTCAGGCAATTTTGAAGCAACCCAAAGTGTGTGCCCACTTGGGCTGGGTCTGAGGGTCTGAATGTTGCTGGAGATATAAAACCATCATTGACTGCATTAGGAAATCTAGTTAGTTTGCATGTAGTTTAACCTGTGTGAGTAACAGATCTGATATTCATTAACTCTTGAGGCCCAGTGATGTTTGAAAAGTGTCTGGTTTTCCATTTCGGGCCACACCTGAGCCTTTTGGCTGCCTCCAGTCTCAGTACAGCCACAGCCCAGGTGGGTGGAAATGGCTCCCACCCCTCACAACTAAATTCTCAGCTGATTCTTTTGTCATGGGTGAGAAGCAAAAGGGGCCCCTGACTAAGAATAACAAACATTTGGACATTGGCAAGGCCTGGTACCTAGTCACTCACTCCAGATCTTTAACCTTATAGTCAGAAAGCTGGAAGAGACTGTGAGTTTATGGGATAAACTGATAGGAGGACCATAGTGTCTTCTTTATTATTTAAAGAAGTCTGAGAACTAAATCATTAGCTGAATGTCCTGCAGACTCATTCTCAACCTGCCGTCTTATATGAGAGTTAGTGTTTCACACACACACACACACACACACACACACACACACACACCAGGTCACCCCAAACTCTGCCTTCCAAAGTCCTCAGATAATCAATCAGAGGGCATCACTCCGGCCAGACCAGAGCTGTATGCAGAAGGTTGAATCTGGTTTATTCTTCTCATGAGCCTGTCCTATCTAGAGTGATTACTTGACACAAAATGTGGTGGCAGGCTAGTCCTCTCCCTTTGCCACCTCCACCCCTTCACATAACCTGATACTCAGCCTGTGTTCTCAGATGATGAAGGTGGCTGTTAATTTCTTGATATCATTGTTAATTCTTCCCCTTTCCCCCTTGGTCTTTCAAGGGAAGACATAGCTGGCAATGACGAAACAGTTTAATTTATTATTGTTTGCAAGACGTGGAGGCCTGTGTGGAGAATGCAGAGGGCCTCACAAAGAGATAAAGATCCCTGTTATCTGATTCAGAGGGAGACACACAGTTCTATCCAGGAGGGAAGGAGCCTTAGACAAACAGATATTTCATTCCTGACCACAGTCACCTAGGCATTCTGTAGACACATGAAGTCCTGGACACCGTGGAGGAGGATACATGTGTGTTCTGATGGTGGTGGTGACTGTTTTAATGATTCACAATATGCATGTCTTAACCCCAGTCTTGTCTGGGGAGCCCTGAAAGGTCAGGTCACAACCTGAACTGCCTTCACCAAGAAGCCTCTCATTTCAAAGGCACTTATGGCACTTATTGTAATTTCACATATCAGGAAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAAGTGTTTTCCTAAAGATAACAGGGAGGGGGGATGCTTCTTGCAGAGACCTGGGCTTAAAAAAAATAATAAAGGGGGGTGGGAGAAAAGGGAGAGAGAAGAAAAGGAGGGGAAAGAAACAGCTCAAATGAACAGAGAGATCACAGTTTGCATGGCTGACCTTCAATAGGCTAAACTGACAAGATCAGTTTTAAAGGGCCACTTAAATCAGTTTCAAAGACTGGAGAAAAATGAGTCGCCCTCTTTGGGGAGAATCTGAGGCAGGGTCTTGGACGCCATTACTGAAGGCTGGGCCAGGTTGTCACACCGCCTCCCCCCCCCCCCAATCCCCATGCACACTGTATAATAAGCCAAATTCAGAGGATGGGGGGAGAAGTATTGATGGTTGGGTTCTGTTTGTCTGGGTACTTTGCACCAATACACTGTCTTAGGCCTCCCAATGACCCAGCCTGAGGACTGGAGCCATGAAAGCCTGCATCACCCAAGCGTGTTTTATTTTAAAGTAAACACTCCAGGACCATCTCAAGCTTCGTCACCTCCCTCCTCCCCCTTGAAGTTTTTAGTGTATAAGCATTTTCTCCAACTCTGGATGGGGCAGTTTGACAGAGCACTGTAGGCACCTCAGGTGACCCATTTCCAACCTCTTAATCTGATGAATTCTCTCTCCCCCTCTTTCCCCACCTTTTTTTATTTTTTTTAAACTTTCTTCCAG
Seq C2 exon
ATGCCTGTGGTCTGTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAGTACGTTAGGAGCCAGTACCCCAACCAGCCAACACGGTTCGGAAAGCTCTTGCTTCGTCTCCCTTCCCTCCGCACGGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCATATATGGCAATTCAATAAATAAATCAATCAAAATAAGGGGGAGTGAAACAGAGAAAGAAAAGGCAAAAGACTGGTTTTGTTTGCTTAATTTCCTTCTGTTAAGAAAGGATGTTACAAGTTTGCTAAAAAGAAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCAAAAAGGAGAGAGAGAAAGAGAGAGACTGCCAAATGAACTTTTACAGAATGCATTAAAAAAAAAGAAAGAAAACAACTCCTGTGTTGGGCAGAACAACCTGCTACTTATCATTTTTGTATAAAAAGGAAATTAGTCTTTTTTTCTTTTTGGTAAATTTTTGAAAAATATTGCTAAAAGTGCATTTAAGGAGATTGGGAGAAAATTAGCAGAATGGACAAAGTAAGTCATTTTTTTCCAAATTATTAATTGTCCTGTGTCTATGTACCTCTAGTTGTTCTTTTTTTTTTTTTTTAACTTTTCTGGTTCCAAACCAGTTTATTCTGTGGTTCAATAATAAGTTTTGATATAATCTTGGCTTCTTAAAAACTGTGTATCATTAAAATATATGTTCTGCAAGAATTAAAACTGAGTCCATGAAAATAGCATAGGAAAACATAAAACTTTAAAAGGCAACTCAGAGATGGTGGAAATGCACTTACAAGTGGTGGCCAAATTGTTTTTTTTTTTTTTTTTTTAAGGTAAAGTTGAGCACTCTAATTAGCAAGCTGGGGGAATCACATCAACACTTAGCTTCCCCACCCCCACCCCATACCATGACAAACCTAGCTTTTTAAAAAAAATATTTTAAGAAACAGAAGGAACTGTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGACACAAGCTGAGGTTTTTGAATAAAAAGTGAACTTTTGTAATTTGAATTGGGTCCCCCCCCCTTAGTTCTTGAATTGTTATGAATCCTATATCTGTTTGTATATTTGCAAGCCCTTTGTATTATAATTGTTGATATTTCCCCTTTTTAAAAAATACCATTGAAATCAGCATGACAAAATAACACTGTTGGCACTTATAGGTAACGTGATTGATTCAGTATCTTAGAGTTTACAGTTTGTGTTTTTAAAAAACTGAAGGTTTTTTTTTTAAGTGCAACATTTCTGTATACTGTAAAAGTTATAATAACTGAACTGTTTGGTCGAGTCTTTGTGTGTTATATTCCAAGGAAATTGAAAGTATTCAGAAATTAAAATATTATTTGATATCTGAAATCTGCTTGGCTGTCCCCACTCACTGTCTTTCCACGGAGCTGAGCCCCTGTGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTATTTGCCTGTTTAATTTGGGTGTGGTGTGGGGGGGGAGCTGAAGTTAATGGTTTAGCTATGGTTTAGGAAGTGCCACACTGATATAGTAAGCCACCCCCATTCACCTAATCCTACTTTTAATTAAAAATGGATTTTCCAGGAAAAAAATAAGGCCCTTATATTTGTCACACTTAAGTGCCTGCTTAGGGAAGGTATTGTGAAAAGTATTAGAAATTTTGAGATCAGTATCTGTTTTATGATCAGAAAAAAAATGCTCTTTTGTACATTTGTGACAGTTATGCAGAGGACTGTCCAAGCAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCCTTAAGTAAGTGTAATTTTTCTTTTTCTTTTTTTCTTTTTTTTTTAAAAATATCCTGAGGTTCTCATTTAGCGTGGCTGTTGAGAGGATTTTGAATACAGTGATGTAGCTGCTAGCGACGAAGGGTCTGTTTTTCTTGTATATACATGATAACTTGCAGTTGCCCTGCCTTTCCCCTCCCCCTCCCTCTTCAGTCTGTTGAGAGCATGGCCACAGGTCAAGGGAATCTTTACCATTGGAGTTATGTACATAAAAAAAAAAAACCATGAACATTTGGACATTTCAGATTATATAGAAACAATCTGTACTGCTCTGGGATCCTTTGGTCTTAGAAACCATTTTTGGGGGGGTGGAGAGAGAGAGAGGGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATAAAGAAAACTTTACAGGGTGTGCTGATTTGGGAAGTCAACTATTTGGTTCTGTCCCTTATTCTCTTTTCCTGGTTTGGGAAGAGCTCACTGCTGGGAACTTGCAATTTGTTCTTATTTAGACTTTCCAAGCTGCCCTCCCTGACAATACTTTTACCATGTTGTGGTTTAATCTTAAAACGGGGGAGGGGGCTGGTGACAGAGGTGAAAGAAAGGAGATCAGTTTGCCAAGTGCATTCAACTTTGATGCTCAGTTCTGGTTCATACATGCAGACCTGAAAACTCTGCCTGATTTAGGCAGAGATCTTTATCTGACCCTCAGCTTCCCTCTGTAGATATATAGATATATAAATATAAATATGAATATAAGTATGTTTTACAGCACAGCATCTGACCTGTAGATGGAGGTTTTGTTGGTTGTTTATTTTCCCCTCTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGGCCCTTTTCCTTGTTTGCTTTGTGTTAGCTTATTGTAAACAGCCATTTGTTGTAAATTATTATTGGCATTAAATTATAATTTATGATTTTCAAAGCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030551:ENSMUST00000032768:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types