RnoINT0102976 @ rn6
Intron Retention
Gene
ENSRNOG00000010308 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:RGD Symbol;Acc:69305]
Coordinates
chr1:131448737-131452460:-
Coord C1 exon
chr1:131451933-131452460
Coord A exon
chr1:131449154-131451932
Coord C2 exon
chr1:131448737-131449153
Length
2779 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTTAAAAACTTTCTTCCAGATG
3' ss Score
8.71
Exon sequences
Seq C1 exon
CTGTACAGAGGGGCAGGATGCCGCCCACCCAGCCTACTCACGGGCAGTTTGCACTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCAGCACAGTGCTCCATGCCCCTCCATGTTGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
Seq A exon
GTAGGAAGGAGACCTGTTCTCAGGTACCCAAGAACTGCCAGGGCAGAGTTAAGGCCTTGGAAAAATGGCCAGCCCAACTTCCCCCTTAAAAGATCAAAGTGTAGAGTGCATTTTGAGGTGAGGACATGATATAACTGCTGGCTTGTCCTGGGATGCAGAAGGTTGCTCCATACGTCCTTATGTATGGAGACGTACATACATACATACATACATACATACATACATACATACATACATACATACGAGGCCTTAGGACTCCTCAGGCCCCTTCCTCTCATGCAGTAGCCAACCTAGAATGTACTCTGTCGCTTCCTCCCTAAGCCCAGGCCTTCTGGGCCTAGTTGGCCCCCAGGCAATCTCCTCATGCTCTGGGCTTCTTTTTTTCTTCTTCTTCTTCTTCTTCACCCTGAATGGGACCTCGAAAAGATGGCCCTGGGCACATTGCTGCCCTGGCATGATCTCTGTAGGAGAAACTTTGTCCCTGCAAGGAGAAAGTTTGCCTGTGAACTCAGTAGGAGTTGGGGGCTCCAGGCAACTGCAACCTGAGAGCAGTCATTTTCAAAATCACATTCTCATTAAAAATAATGCAGACCGTCAGGAGAAACGGGGGTGGGGGTGCTGTCAGAATGGGACAGGAGGGGCTAAAGGACTATGATAATCCCAGAGTGTCTGCAGGGGGCTGAAGGCTGGCCTCTTGCATTCCCTGCTCAGGCAAATACTTCAGGCAATTTTGAAGCAACCCAAAGTGTGTGCCAACTTGGGCTGGATCTGAATATGTTGCTGGAGATATAAACCATCATTGACTGCATTAGGAAATCTAATGAGTTTGCATGCAGTTTAACCTGTGTGAGTAACAGATCTGATATCCATTAACTCTTGAGGCCAAATGATGTCTGAAAAGTGTCTGGCTTTCCATTTCGGGCCACACCTGAGACTTTTGGCTGCCTCCAGTCTCAGTTCAGCCATAGCCCAGGTGGGTGGGAATGTCTCCCCACCCTTCACATTCTTGTACTAACTTCCAGCTGATTTCTTTGTCATGGACGAGAATCAAAAGGAATCCCTGGCTACAAACATTTGGACATTGTCAAGGCCTGAAACCTAGTTACTCACTCCAGATCTTTAACCTTAAAATCAGAAAACTAGAAAAGACTGTGAATTTATGGGACCAACTGATAGGAGGACCACGGTCTCTTCTTTATTGTTTAAAGAACTCTGTAACCAAATCCTTAGCTGAATGTCCTACAGACTCATTCTGAACCTGCTGTCTTGTATGAGTTACTTTTTCACACACACACACACACACACACACACACACACACACACACACACCAGGTCACCCCAAACCCTGCCATCCAAAGTCCTCAGATAATCAATCAGAGGGCACCACTCTGGCCAGGCCAGAGCTATATGCAGAGAGTTGAGTCTGGCTTATTCTTCTCATGAACCTGTCCTATCCAGAGACTGTCTGCTTGACACAAATGTAGTGGCAGGCTCGTCCTGTCCCCTAGCCACCTTCTCATAACTTGATACGGGTCCATGTTCTCAGATGATGGAGGTGGTTGCTAATTTCTTGATATCATTGTTAATTCTTCCCCTTTCCCCTTGGTCTTTCAAGGGAAGAATTGCCTGGCACTGACGAAACAGTTTAATTTATTACTGTTTGCAAGATGTGGAGGCCTGTGTGGAGAATGCAGATGGCCTCACAAAGAGATAAAGGTCCCTGTTATCTGATTCAGAGGGAGACACACAGTTCCAAGCAGGAGGGAAGGCGCTCTAGACAAACAGATCTTTCATTCCTGACCACAGACACCTAGGCATTCTGTAGACACATGAAGTCCTGGACACAGTGGAGGAGGTTACATGTGTGTTCTGGTGCTGGTGACTGTTTTTGAATATCTGTTCTAATGATTCACAATATGCATGTCTTAACCCCAGTCTTGTCTGGGGAGCCCTGAAAGGTCAGGTCACAACCTGAGCTGCCTTCACCAAGAAGCCTCTCATTTCAAAGGCACTTATTGTAATTTCACGTATGGGGGGGGGTGTTTTCCTGAAGATAACAGGGAGGGGGGATGCTTATGGGAGAGACCTGAGCTTTAAAAAAATATATAAAGGGGGGTGGGAGAAAAGGGAGAGAGAAGAAAAGGAGGGGAAAGAAACAGCTCAAATGAACAGAGAGATCACAGTTTGCATGGCTGCCCTTCAATAGGCTAAACTGACAAGATCAGTTTTAAAGGGCCACTTAAATCAGTTTCAAAGACTGGAGAAAAATGAGTCGCCCTCTTTGGGGAGAATCTGAGGCAGGGTCTTGGACGCCATTACTGAAAGCTGGGCCAGGTTGTCACACACACACACACACACACACACACACACACACACACACACACACACACACCCCTATGCACACTATATAATAAGCCAAATTCAGAGGATGGGGAAAGAAGTATTAATAGTTGGGTTCTGTCTGTCTGTCTGGGTACTTTGCATCGGTGAACTCTTTCCTGGGCCCCCCAATGACCCAGCCTGAGGACTGGGGCAATGAAACACTGCCACCACCCAAGCGTGTTTTATTTTAAAGTAAACACTCCAGGACCATCTCAAGCTTTGTCACCTCCCTCCTCCTCCTTGAAGTTCTCAGTGTACAAGCATTTCCTCCAACTCTGGATGGGGCAGTTTGACAGGGCACTGTAGGCACACCTCAGGTGACCCATTTCAAACCTCTTAATCTGATGAATTCTCTCCCTCCCCCCTTTTCCCACTTTTTTTAAAAACTTTCTTCCAG
Seq C2 exon
ATGCCTGTGGTCTGTCTGATGTAGCCCACGTGGAAAGTTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAGTACGTTAGGAGCCAGTACCCCAACCAGCCAACACGGTTCGGAAAGCTTTTGCTTCGTCTCCCTTCCCTCCGCACGGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCATACATGGCAATTCAATAAATAAATAAATCAAAATAAGGGGGAGTGAAACAGAGAAAGAAAAGGCAAAAGACTGGTTTTTGTTTGCTTAATTTCCTTCTGTTAAGAAAGGATGTTACAAGTTTGCTAAAAGAAGAGAGGGGAAGAACTTAATGGACTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010308:ENSRNOT00000014152:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]