HsaINT0115622 @ hg38
Intron Retention
Gene
ENSG00000185551 | NR2F2
Description
nuclear receptor subfamily 2 group F member 2 [Source:HGNC Symbol;Acc:HGNC:7976]
Coordinates
chr15:96334076-96340263:+
Coord C1 exon
chr15:96334076-96334603
Coord A exon
chr15:96334604-96337347
Coord C2 exon
chr15:96337348-96340263
Length
2744 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GTTTTTAAACTTTCTTCCAGATG
3' ss Score
9.6
Exon sequences
Seq C1 exon
CGGTGCAGAGGGGCAGGATGCCGCCGACCCAGCCGACCCACGGGCAGTTCGCGCTGACCAACGGGGATCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGTTGCGCGCGGAGCCCTATCCCACGTCGCGCTTCGGCAGCCAATGCATGCAGCCCAACAACATCATGGGTATCGAGAACATTTGCGAACTGGCCGCGAGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCCGACCTGCAGATCACGGACCAGGTGGCCCTGCTTCGCCTCACCTGGAGCGAGCTGTTTGTGTTGAATGCGGCGCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTGCATGCTTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCGCTGCACGTTGACTCAGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
Seq A exon
GTAGGAAGGAGCCCTGTCTTCTCGTGCCCACGGGCTCCTAGCCCAGAGCTGGGGCCCAGAGAACTTGGGAGTCCCCAGGGCAAACCCAGTCTGCTCCTTGAAAGGCCAAACTGTTGAGTGCAACTTAAAGTGGGAACTTTTTATAGCTGCTGGGCACTACCAGGCCTGTCCTGGGGAGAGGAGAGGAAGGCTGGATTGCAGGAAGGATGCTTCAGATAGATTCCCCACATGGGCCATAGGGCAGCCTCTGCTGCCTGTTTCCCCCACCTGCAGTATCCAGATTGGGATGCCCTCTCCTGCTCCCTTTCCTGAGCCCAGGCCCCCCGGGCCTGCTGGGCCCCAGGGAATCTCCTCAAGCCCTCGGTTTTCTCTAGCGCCCTGGCTGGGCCTCCAGGAGATGCCCTGGGCAGTGGAGCAGCCCTGACATTGTCTCTGCAGGGAAAAGTTTGCCTGCTAACTCAATAGGAGTTGGAGCTCCAGGCAAATCCAACCTGAGGGCAGCAATTTTCAAAATCATATTCTTACTGGAATAATGCAGACTGCCAGGAGAGGCGAAAAGATGTGTCAGGATGGGGCAACAGGAGGAAAGGGACCGTCATAACTCTTCAGAATGTCTGCAGGAGGTTGAAGACTCTGGCCTCTTGCTTCCCCTGCCCAAGCAAACACTTAAGGCAATTTTCAAACAACCCAAAGTGTATGCCAACTTGGGCTGGATATGGATGTTGCTAGAGATATAAAACCATCATTGACTGCATTATGCAATCTAATTAGTTTGCATGTAGTTTAACCTGTGTGAGTAATAGAGCTGATACTAATTAACTTGAGGCAAAATGATTTTTGAAGGTGTCTGGCTTTCCATTTTGGGCCACACCTGAGCTTTTTGGCTGCCTCCAGGCTGAGTTCAGCATAGCCCAGGTGGATGGAAATCACCAACCCCCTTTCACATTCTTGTACTAAGTTGTCAGCTGATCCTTTTGTCATGGCTGAGAGGGGAAAGGGGTTCCCGATTAAGAATAACAAACATCTGGACGTTAGCAGGGCTTGGAACCTAGTCACCCACTACAATTTTTTAAGCTTGTTAACAGGAAACGAGGAGAGATGTGTAGTTTATGTGGCAAACATAAAGGAGGTCCACAATCTCTTCCTTATTGTTCGAAAGAAGTCTGGGGAACTAAGTCATTAGCTGAACAGCTTGCAGCTTCTTAGTCCTCAAACTGCTGTCTTGTACATTGCTGCTTTCCACATAAAACCTCCCAGCACAGCCACCCCAAATTCTGCCTTTGGAAGTCCTTAGGTAATCAATTAAAGGCCAGTGTCTGGGCAGGGAAGCTGTTTGCAGAGGTTTGGATAGGGATTATTTTTCTCGAGTGCCCCTCATACCTAGAACGTTTGCCTGCTGCAGATATACAGACAAGATATCTCCCTACCTCATAGCCACCTTCACCCCTGTCCCACAACCCAACACCCAGCCCACCTTCTTGGACGATGGAGGTAGTCGTTAATTTCTTGGTATCATTGCTAGCTCTTAGCCTTACCCTTGGTCTTTCAAGGAAAAAAAAATGCCTGATACTGTCGTTAACAGTTTAATTTATGACTATTTGCAAAATGTGGAGGCCTGTGTGGAGAATGCAAATCGCCTCACAAAGAGATAAAGGTTCCTGTTATCTGATTCAGAGGGAGACACACAGTTCCGAGGATGCCGAGGGAAGGAGTCCTGTGCAAACAGATCTTTTAGTTCCTGTCCACAGACACCTCTACATTCTGTAGACATGCAGAGTCCTAGATATACATATGAGGAGGTTGCATGTGTGTTCTGGTTCTTGGGGTGGAGGTGGTGGTGGAGATTTTCGAATATCTGTTTTAATGACTCACAATATGCATATGTTAACCCCAGTCTTGTATGGGGAGCCCTGAAAGGTCAGGTCACAACCTGAACCGCCTTTACCAAGAAGCTTCTCATTTCAAAGGCACTTACTGTATTTTCACGTATCAAAAAAGAAAAGTGTTTTCCTGAAGATAACAGGGAGGGGGGATGCTTCTCGGAGGGACCTGGGTTTTAAAAAATAAAGGGGGGTAGGAGAAAAAGGGAGAGAGAAGAAAAAGGGGGAAAAGAAACAGCTCAAATGAACAGAGAGATCACGGTTTGCATGGCTGCCCTTCAATAGGCTAAACTGACAAGATCAGTTTTAAAGGGCCACTTAAATCAGTTTCAAAGACTGGAGAAAAATGAGTCGCCCTCTTTGGGGGGAATCTGAGGCTGGATCGTGGACGCCATTACTCGGGACTGGGCCAGGTTGTCCACCCCCAACCCCCAACCCCTATATAATTATAAGCCAAACTATTATTTACAGAGGAGGAGGGGAGAGAGTGCTGGTAGTTTTGGTTTCTTCTGTTTACTGACTTGGGCCAGACAGACCCAATGCACTTTTGCTTGGGCCTCTCAATGACCCAGGCTAAGGACTCGGGCAGTGAAAGCCTGTAGCACACTGAGCTATGTTTTATTTTAAAGCAAACACTTCCTCAGGACCATCTCTTGCTCTTTCTTCCCCCACCCCGCCTCCCCCCCTTAAGTTTTCAGTACATAGACATTTGCTCCAACTCCGGTTGGGGCAGTTTGACAGAGCTCTGTGCACACACCTCATGTGACCCAATTCAAACCTCTTAATCTGATGACTGAATTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTGTTTTTAAACTTTCTTCCAG
Seq C2 exon
ATGCCTGTGGTCTCTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCTCAGTGTGCTTTGGAAGAATACGTTAGGAGCCAGTACCCCAACCAGCCGACGAGATTCGGAAAGCTTTTGCTTCGCCTCCCTTCCCTCCGCACCGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCGTATATGGCAATTCAATAAATAAATAAAATAAGAAGGGGGAGTGAAACAGAGAAAGAAAAGGCAAAAGACTGGTTTGTTTGCTTAATTTCCTTCTGTTAAGAAAGGATATAAAAGGATGTTACAAGTTTGCTAAAAGAAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCAAAAAAAAAAAAAAAGACTGTCAAATGAACTTTTACAGAATGCATTAAAAAAAAAAAAAAACTCCTGTGTCGGTCAGAACAACTTGCTACTTATCATTTTTGTATAAAAAGGAAATTAGTCTTTTTCTTTTTTTGGTAAATTTTTGAAAAATATTGCTAAAAGTGCATTTAAGGAGATTGGGAGACAATTAGCAGAATGGAGAAAGTAAGTCTTTTTTTTTTCCAAATTATTAATTGTCCTGTGTCTATGTACCTCTAGCTGTTCTTTTTTGTACTTTTCTGGTTCCAAACCAGTTTATTCTGTGGTTCTATAATAAGTTTTGATATAATCTTGGCTTCTTAAAAACTGTGTATCATTAAAATATATGTTCTGCAAGAATTAAAACTGAGTCCATGAAAATACCATAGGAAGACATAAAACTTTAAAAGGCAACTCAAAGATGATGGAAACGCACTTACAAGTGGTGACCAAAATTTTTAGGTGAAGTCGAGCACTCTAATTAGAGAACTGGAGGAACCACATATAACACTTAACTTCCCCTACCCTGCCCCTCCCCAAAAGAAACCATGACAAACCTAGCTTTTAAAAAATATTTTAAGAAAGAGAATGAACTGTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGACACATGCTGAGGTTTTGAATAAAAAGTGAACTTTTGTAATTTGAATTGGGTCCCGCTTAGTTCTTGAATTGTTATGAAAATCCTATATCTGTTTGTATATTTGCAAACCCTTTGTATTATAATTGTTGATATTTTCCCTTTTTAAAAAATACCATTGAAATCAGCATGACAAAAATAACACTGTTGGCACTTATAGGTAACGTGATTGATTCAGTATCTTAGAGTTTACAGTTTGTGTTTTAAAAAAACTGAAGGTTTTTTTTTTAAGTGCAACATTTCTGTATACTGTAAAAGTTATAATAACTGAACTGTTTGGTCGAGTCTTTGTGTGTTATATTCCAAGGAAAATTGAAAGTATTCAGAAATTAAAATATTATTTGATATCTGAAACCTGGCTGTCCCCACTCACTGTCTTTACATCTAGAAGAGCCCCTGTGAGCTCTCGCTTAGCTGGCCGGGCGGGGGGTGGTGGGGGGGGGCATTTGTTTACTCCCCTCAGTCAGTTTGTTCAAAGGTGGACTACTGTATTTGCCTGTTTAATTTGGGTGTGTGTGTGTTGGGGGGGGAGCTGAAGTTAATGGTTTATCTATGGTTTAGGAAGTGCCATACTGATATAGTAAACCACCCCCATTCACCTAATCCTCCTTTTAATTAAAAATGGATTTTCCAGGAAAAAAAAAAAGGCCCTTATATTTGTCACACTTAAGTGCCTGCTTAGGGAAGGTATTGTGAAAAAGTATTAGAAATCTTGAGATCAGTATCTATTTTATGATCAGAAAAAAATACTCTTTTGTACATTTCTGACAGTTACTCAGAAGATCGTTCAAGCAAGCTAATCACAGCATTGTAACTAGAGGACAGTTGTTTGCAGTGAGTTTTTCCTTAAGTAGGTACGATTTTTTAAAATATTCTGTGATTCTACTCTAGCGTGGTTGTTGAGAGAGTTTCAAATTCAGTGATACAGGTTCTAAGACTGAAAGGTCTACTTTTAATGTATATATGATAACTTGCAGTTGGTTTCCCTCTCCCCTCCCCCCCTTTACCTTCAGTCTGTGAGAGCATGACCACAGGGTCAAGGGAATCTTTTCCATTGGAGTTATGTACATAAAAACACATCGACATTTTGACATTTCAGATTGTGTGGCTACAATCTGTACTGCTCTTGGGATCCTTTGTCCTTAGAAGCCAAATTAAGGAAGAGAAAGCAGGACAGAGAAAAAGAAAGAAGGAAGGAGGGAAACTTTACAGGGTGTGCTGATTTGGAAGTAGTAACTATTTCTTTTGGAGTCTTTTTTTCATTTTTCCTCTTTCTCTTTTCCTGGTTTGGAGGAAGCTCGGTGCTGGGAGCTTGCAATTTTGTTCTTATTCAAGGTTTCCAACCCACCCCCCCACCGCCAGTACTTCATCATGTTGTGGTTTAATTCTAATTGGTGGGGGGGGGGGAGGACTAGTGAGGGAGGTGAAAGAACAGGGATAATTTTGTAAAGTGTATTAAACGTTAATATTCAGATCCAGTCAATACATGCAGACCAGTAAAATCTGATTTGTGCAGAGTTCTCCATCTGACTCTCACTTATTTCTGTAGATATATACATATATAAATACAAGTATGTTCTTACGGCACAGTATTGCTGACCTTTAGTTCGAGGTTTTGTCGGTTGTTGTTGATTTTCTTCCTCTTGCAAGTGCTATCCATGTGAGTGTGTGAAGTTTCTCTAATAAGTAAAACACAGGCCCTTTTCCTTGTTTGTTTTGTGTTAGTTTATTGTAAACAGCCATTTGTTGTAAATTATTATTGGCATTAAATTATAATTTATGATTTTCAAAGCAAAAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185551:ENST00000394166:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(67.3=74.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development