GgaINT0029976 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10077757-10079293:+
Coord C1 exon
chr10:10077757-10077931
Coord A exon
chr10:10077932-10079212
Coord C2 exon
chr10:10079213-10079293
Length
1281 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ATGGTTGTTGTTCTTCACAGATT
3' ss Score
9.14
Exon sequences
Seq C1 exon
GTACAATGTGAGTCAACTTGAAGAATGGCTACGTGATAAAAATCTAATGAACAGTGGGGCCAAAGAAACACTGGAGCCCCTCATACAGGCTGCACAGTTGTTGCAAGTGAAAAAGAAAACAGATGAAGATGCAGAAGCCATTTGTTCAATGTGCAATGCACTGACTACTGCCCAG
Seq A exon
GTAATAACCTCTCATTCTCTTTTTGCTGTCTCTTTTGAGCAGTTCTCTGTTCTGCTGTGTTTGCTAAGCCTGCCTGCACCGCTGTTGCAGACAGGTCATACATTGCTAACATTGCTTTGAGTTTGTATAACTAAACAGATTAAATTAGAGCGGTGAAAAAAAGGACCAGGTCTAGTGCTCAAGGTGTTTTGACCAATTGAGAGGAAACTCAGCACACTGTGCAGTGTGTAGCACTATAATTAGTTTCAGGATGCAAAAATCCTCAGAGAAAAGCCTTCACTGGCATCTCTGTTCCCCAGGTAACTCTGCCTAGGATTCTAGGAAATTATCTTTCTGCCATCTGAGTTGGCATCCATTTAAGATAGTGGACAATTCAGGCAGAGCTGTTGTCTCAGGATTTGCAAACAAGAGTATTAAGTTCCTGTACCCATTAGCCTCAAAAAGGCTGAGCCAAGTGTATCTCAGTTGGCAGCACAGCTGAAGGCTTCTCCATAGGAAAGCTTAGGTTTTGCAAAGACAAGCTGCACTTATCTTAACTGTGCAACATATGCTTCGAATTTTTATGGTAATAACAGGATCCAAGCATCTTTGGTTATTACTGAACATTCTTATCAGGAAAAGAAACAAATTTCCGTTCCTTTCATAGTGATGTCAGCAGGAGCAGTGACATTGATACAGCTGTTTGGATTTAGTAATGCACTGATTTAGTTCTGAACTGAAAGAAGGTATAATTCTATGGGCTTTGAGTGTTTTCTGTTGAGAAGATTTGTTTTTTAAACAAAAAAGTAAAAGATTGACTTATTTATGTAAGTTTTATATGTTTAATTCATTACTGTTCAAAGGCTCTGTGTTGCAGTTTAGACTTCTGGTGACAATAGCCCTGCTTTTAGAGAAATAGCTCACTCCCTTGAAAAACACTGAGGTCATAAGATGCTCTTGAGTGAAAGCTGCAGGAGGCCATAGGGAGTCAAAGCTAGGAAGAGAAGTGCACTTTGTTTCCAGAGCATGTAGGAATGCAGTGAGCTGTTTATCATCTGACTTTGCCACAGTTTGGTGTTTTCCCCATGCATGGAAGAATTGGAGTTTCTACCTCCAAAGAACACGTGTTCTAAGGGGGCAGGTTTAAAAATACCTTTGAAGAGATAATGACATTTTGTATGAATCAGTAAAACAAACAAAAAGAAATACTTTAGATTTTAACAATAGCTCATGTAAAAAATGTATCAGTAACTGTAGACTTATTAGTAGAGTGAAACTAAGGATGGTTGTTGTTCTTCACAG
Seq C2 exon
ATTGTGAAAGTACTGAATTTGTATACTCCAGTTAATGAATTTGAAGAGAGAGTCTTGGTATCGTTTATACGTACAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100),PF0146614=Skp1=PU(70.3=88.1)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1),PF0146614=Skp1=PD(27.0=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTGAGTCAACTTGAAGAATGGC
R:
AAACGATACCAAGACTCTCTCTTCA
Band lengths:
238-1519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]