MmuINT0104422 @ mm10
Intron Retention
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75215085-75217579:+
Coord C1 exon
chr9:75215085-75215259
Coord A exon
chr9:75215260-75217498
Coord C2 exon
chr9:75217499-75217579
Length
2239 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTTACCTTTTCTCTCTCCAGATT
3' ss Score
12.69
Exon sequences
Seq C1 exon
GTACAATGTCAGTCAACTGGAAGAATGGCTACGTGACAAGAATCTAATGAACAGTGGGGCCAAGGAGACTCTGGAACCTCTTATCCAGGCCGCTCAGCTTTTGCAAGTGAAAAAGAAAACTGACGATGACGCAGAAGCCATCTGTTCCATGTGCAACGCCCTGACCACGGCCCAG
Seq A exon
GTACTGCAGCCGTCCACAGGCCGCACACCACGGCAGCCATCCCAGAGGATGTCAGTGTAAATCTGGAAGAGAGGGGATTTTATTATCAATTAATCTCAGTGCTGCTCATATTCATATGTAGAATATCCAACAAAGAGTAAGGGCATAGTACTCTGTAATGTTCTAGGCCCTGAAATACTACCTAGAATAAAAACAAAGTCCCTGCTCTCATGAGGGATATATTCTGTCGAGCTTCCATTCCATGAAGTTATTTCTATGTTTTTCAGTAGTTAATGGTTCATTAGATTTTTCTATTTGGGGCCAGTAGCATGGCACTGGCAGAAAAGGCACTTCCTGGCGAGCCTGATGACCTGAGCTTGACCCCTGAGACCCACAGGTGGAAGGAGAGAACCAATTCCCAAGGCTGTCCTTTGACCTTCACTGCACATGCATGCTCTGGCACTGCCTACATACACAAAATAGTTCTTCCTCTCTGTCCTACATGGGGTCAGTTCCCATCAGCAGTATCATACTTGTGGAGGTAATTACTTTAATTAACAATAAGAAATCCCCATGTTCATGAGCTTACAGCTCAATAGGGGAAAAAGAAATACTTGAAGCTAATATCAAAAAAATGTAACAGGTTCTGTTCTTTTTTTTTTCTTTTTTGGGTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGAGGAAGCACTAACAGCCTTTTCTGAGAGGCGCCACTCAGTAGCCTTGAACTTGAGAAGTGCCAAGACAGGAATGGTGTTAGGGGAGACAGCAGCAGGCACAGGAAGGCCTCAGGAAGCACCGGCTGTCCTCCTCGCCTGGTTAGTTCACCTCCCTGATGCTGCTTAGCTCTTTATCTCTGGCCAGTGTGATTCACTTCACTCAGTGAAAACCATGGAATCACCAGCATAGCTTCTTAGTGCCAAAATTTACGGAAATTGTTGCTGTAAACTTATTTTTGAGTGGAAATTTTCAGTACTGGTAATGGTCTTGAAGTCTTTTCCATTTCTACCAAGTAATGGCACAATGGGGAAACCTGATAACAATGTTTCCTGTCCTCCAGCTTTTAGAGAATGTGCGCTAACACTTAATATCTCGATGTTACTATCCCACATGCCCTAAAGAATTAAGTCAACCGTTAATTTGGTTATTTACTTGATTGATTTGACAAGTCCTTTGTGCAGCTTTAACCCTGGTCTCTGAGTGGCTGATTCCTGAGTCAAGTGTGTCGTCACTCACCGACTTTTATTCCATATCTCTCTGTTGCTTACCATACTCTTTGCCTATAGGTTGGCATTGGCCTGTACTTAACTTTCTGTTAATTTAAATGTAAATAACCACATGTGACTGTGGTAGCTAGTGTGTCAGCACAGCTTTAAAAAATAACTTGAAAATGAGGCTAGGTATAGTGGTACAGGCTGTAATTCCAGCACATGGAAGCTGGTGAGAGGACAGCAAGTGAGAGACCAGCCTAGCCTGCAGAGGAAAACAACAGTTCTACCTTACACAGACAATGATGTTCTTAAGACTAATAGTGAATTCCAGGCCAGCCTGAGGTACATAGAGATCTGTCTCAAGCCCTCCAGTACCATAAGAGGAAAGAGAAATGACCAATTTTTTTAAGACTATTTTTAATTTACTTCTTAACTTTTTGGTTATTCATTCATAATTACTTTCTTTTCTAAACATGAGTTTTTAAGATTGTTTAAAATGAATAATATTTAATTCTATAATTTTAACATGGCCACATATGCTGTAATGTGAAGACAGCAAGTTGCAGAACATTACCAGAAAGCATTTCATTTGTATAAAAATATCAAAAGCCAGAACGTGTAGAAAGTAGCTTGGTGGCCCAGAGCATGGGTAGCCATTGCTGCATTAGGAGATGGAGAAGATAAATAGGGGCACTTTTCCCCGAGTTATATTTTGTACTGTTTGAATGGTTTTCTCATTTTTCTTCTTAAAATGTTACATAACTACATTCTTCTTGTAAAACTTCAAACACAAAGGCAAGAGTGCCCTTCAGTTCCTCCTTCGCTCCCTCCCAGCCCACCCCAGGTAAAACTGAAAGGGAGGTGCAGCAGGCCCTTCCCACTCAGCAGCTCATGAAGAGCCAGGCTGTTAGTGAGACAGTCTTTACCTTTTCTCTCTCCAG
Seq C2 exon
ATTGTCAAAGTGTTGAATCTGTACACACCGGTTAATGAGTTTGAAGAAAGGGTCTCAGTTTCATTTATCCGCACTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593:ENSMUST00000123128:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100),PF0146614=Skp1=PU(69.3=88.1)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1),PF0146614=Skp1=PD(28.0=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types