DreINT0100848 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39059882-39060914:+
Coord C1 exon
chr18:39059882-39060056
Coord A exon
chr18:39060057-39060833
Coord C2 exon
chr18:39060834-39060914
Length
777 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
ATCTCTTATTTTCTACCCAGATT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTATAACGTGAGTCAGCTGGAGGAATGGCTGAGGGATAAGAACCTCATGACATGCGGCGCTAAAGAAACACTGGAGCCGTTGATTCAGGCTGCGCAACTACTGCAGGTGAAGAAGAAAACTGATGAGGACGCCGAGGCCATCTGCTCTATGTGTAACGCCCTCTCCACAGCACAG
Seq A exon
GTATCTATCTATCTATCTGTCTATCTATCTATTTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTATCATCTTTTGTCTCTGTAAGTCTGTCTGACTGTCTAATCTCTTGATCTAGTCAAGTCAACTTTATTTCTACAGCGCTTTATACTATATATACTATATAACTTCAGGTTAACTATGTTTATATATAATAACTGTTGAGCTATTAGTTACTAGTCAATTAGTTGAAGTTAATGGTAACTTTTAATGGTTTGGTAAATAATAACCTTAACTTTTCCGAATTTGATTGTATTACAATAATGTGCACATTTGAAACAGCTGCTTTGAAACAGTAATTATTGTGAAAAGCATTATACAAATTAACTTGAATTGAATTGAATTGAATTGACTACGATGAAAATTGCCTCAAAGCCAATTTACATGGATAAAATGGATAAAAACCCAGTATTTCAGTTTGTTAGAAATATATTCTGCGTATCACACTGGTAGCAGAGTAGTGGTAGAATGCTGGTGTAGTTCTAGTGAAAATAAAACTGATATGGTTCAGTTTAATAAGAATGTCAACCTTTCTGTCAGTCAACTAGGAACTATTGTCTGGTTTACTGTGGTAATATTAATAGATTAAAATGATCCCTGTGCAACACTTTGCATGTTAGAATAACACAAAATACTTTAAATGTTTTTAATGTAAACGCACACACACAAACTTACAAAAACCTCATAATCTCTTATTTTCTACCCAG
Seq C2 exon
ATTGTGAAAGTGCTGAACTTGTACACACCTGTCAATGCATTTGAAGAGCGAGTGTCAGTGTTGTTCATCAGAACAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAGTCAGCTGGAGGAAT
R:
ATGAACAACACTGACACTCGCT
Band lengths:
238-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]