RnoINT0097245 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82153476-82156014:+
Coord C1 exon
chr8:82153476-82153652
Coord A exon
chr8:82153653-82155933
Coord C2 exon
chr8:82155934-82156014
Length
2281 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTTCCCTTTTCTCTCTCCAGATC
3' ss Score
14.13
Exon sequences
Seq C1 exon
AGGTACAATGTCAGTCAATTGGAAGAATGGCTACGTGACAAGAATCTAATGAACAGTGGGGCAAAAGAGACTCTGGAACCTCTTATCCAGGCTGCTCAGCTTTTGCAAGTGAAAAAGAAAACTGACGATGACGCGGAAGCCATCTGCTCCATGTGCAACGCTCTGACCACAGCCCAG
Seq A exon
GTACTGCGGCCCTCCATACCATAGTAGGCTTGACACACATAGTAGGCTTCCCAGAGGAGCTCTGAGAAGTCAGGCCTGCCGGGACTCCTCTCTCCTCACTGACCTCCCTCCTTGGCAGAGAAGATACGTGTCAGTGTAAACCTGGAATTTATTTTAGAAGGGATTTTATTATCAGTTAATTTCAGTCCTGCTCATAGTCATGTGTAGAATATTCAGCAAAGAGTAAGTGCATGGTGTTCTGTGATGTTCTGGGCCCTGCCATGCAACCTGGAATAAAACCAAGTCCCTGCTCTCGCGAGGAATATCTGCTGTAGAGCTCCAATTCAGTTCCATGACGTTACCTCCATGTTACTCAGTCATTAATGGTTCTTTACTTCTTCTATTTGGGGCCAGTAGCGTGGCTCTGGCAATAAAGGCACTTACTGGGAAGCCTGATGACCTGAGCCTGATCCCTGAGATGCACAGGGAAGAACCGACTCCCAAGGGTTGTCCTTTGACCGTCACATGCAAGCTCTGGTGCTGCCCACATACACAGAATAATTCTTACTCTCTCAGTCCTAGATGTGATTAATCCCCACCACACAGTAGCATACCTGTGGAGGTAATTACTTTACAATAAGAAATCTCCACCTTCATGAGCGAACAGCTCGGTAGGGAAAACAGAAACACCTGAAGCTAACGATATCCCAAAAAAATGTAGCATGTCCTGTTCTTAATGCTTTACGAGAAGCACTGACAGCCGTCTGAGAGGTAGCACTCACAGCACGGAACTTGAGGAAGGGCCAGGACAGGAATGGCATTAGGGGAGCCAGCAGCAGTCAAAGGAAGGCCTCAGAAGTGCCTGCTGTCCTCTTCACTGGGCTATTTCATCTCCCCATGCTTAGCTCTCCATCGCTGGCCTGGAGATTCACTTCACTCAGGGAAAACTGTTAGGATCACAGTCATAGCTTCTTAGTGCCGAAATTTACAGAGATTATTGCTGTAAACTTACTTTTGAGTGGAAAATTTCAGTACTGGTAATGGTCTTGAGGTCTTCCCCATTTCCACCAAGTTCGGGAAGTAATGGTACAGTGGGGAAACCTGACAACATATGTTTCCTGCCCTCCAGCTTTTAGAGAATGTGCTCTAGCACTTATTATTTCAATGTTTCAATTATTTCAATATTATTTCAACATGCCCCAAAGAATTGAGTAGACCTTTAATTTGGTTATTTACTTGATTTACTTGGCTGTCCTTTGTGCAGCCTTAACCCTTGTCTCTGAGTGGCTGAGTCCTGAATCGAGAGTGTCACTCAGACTTTTATTCCATGTCTCTCTGGCGCTCACCATACTCTTTCCTATAGGTTGGCATTGCCCTGTACTTAACTTTCTGTGTAACTCATTTAGATGTAAATAACCACGTGGGACTGTGATAACTAGTGTGTTAGCACAGCTCTAAACGGTAACTTGAAAATGAGGCTGGGCATGGTGGTGCAGGCTGCAATTCCAGCACACGGAAGCTGATGTAAGAGGACGGCAGGTTTGAGACCTGCCTAGGCTGCATCTCAAAACCATCTCAAAACAACACTTCCACCTCACGTAAACAGTGATGTTCTTGACGCTAAATGGGGCTACATAGTGAATTCCAGGCCAGCCTGGAGTACATAGAGATCTGTCTCAAGCCCTCCAATACCATAAGAGGAAAAGAGCAATGGCCTTTTATTTATTTATTTATTTTTTATTTTTAAGATCATTATTAATTTACTTCTTAACTTTTTGGTTAAATTGCTTTAAAGACCTTATCTTTGTGTTATTCATTATAATGTCTTTCTGTTCTAAACATGAATTTTTAAGATTGTTTAAAACGAGTAATACTTAATTCTATAATTTTAATATGGCCATATATGCTTTAATGTGAAAACAGTGTTATTGAAGAATAACACTACTGGAATGAATTCCAATTGTATAAAAATATCAAAGGCTTGTGGACAGTAGCTCAGCGGTGGCCCAGAACATGGGCAACCATTGTTGCTCTCAGAGATGGAGAGGATGAAGAGGGGCACTTTTCTCTGTGTCGTATTTATACTGTTTGAATGGTTTTCTGATTTTTTGTTTCTTCTTAAAATGTTACATGACTACATTCTTCCAGTAAAACTTGAAACACAAGGCAAGTGTGCCCTTTGCTTCCTCCTTCCCTCTCTCCCAGCCCACCCGGGTAAAACTGAAAGGGAGGTACAGTGGTCCTTCCCAGATCCTGACCAGCCAGCCTGTTTGTGAAACGTCTTTCCCTTTTCTCTCTCCAG
Seq C2 exon
ATCGTCAAAGTGTTGAATCTGTACACACCCGTTAATGAGTTTGAGGAAAGGGTCTCTGTTTCATTTATCCGCACTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]