GgaINT0030248 @ galGal3
Intron Retention
Gene
ENSGALG00000003021 | F1NIT6_CHICK
Description
NA
Coordinates
chr10:4575614-4576945:-
Coord C1 exon
chr10:4576901-4576945
Coord A exon
chr10:4575724-4576900
Coord C2 exon
chr10:4575614-4575723
Length
1177 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TACACCTCTTACATCTACAGGAG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GATGAGAAGAATCAACTGATGACCACGAATGTCTGGCTGAAACAG
Seq A exon
GTATGTGTAAAATAGCAGTGAATTCTGAGGTTTCATAACTGCAAATCGAAAATTGGATGCAACTTTCCTAAATATTTGTTTGCTCAGATGCATTGGTTCCTACTTTTCATAGTATGTTTACATTACATCACTGGAAATGCTTGAAAGGATTAATTGTTGTAAAATTCAGTTAAAAAAAAAAAAAGAAATATGTTTTTAAGATGTACTTTATAAAAAGAATTCTGAGACTGCGTTGAATGCTGCTTAATAGACCAAGGTGTGTGTTATCACCATGATGAAAGTCACTGCCTCCGTAAAACAAGTTTTCTTTCAAGAGCTGTGTTAAGAGAAGCATGAGGGGTTTGTGTATTTTTTTTTATATATTTGTTTTAAGATATGTCTCTTGTCAGACATTTAGTGAATAACTACCACTGAAGTTTTCACTTTCAGAGTTGTATGTACTTGCTATAAAAAGATGATTTTCCTCATCACAGCATTTGTTTATGGGCAAGAGGAAGCTACGGGCTTGGTAATAATCCAAGTCCCATGCTAAACTTAGTGGCCACTATTAGCCTGGGAAATGCTTCTCACAAATCATTCTTAATTTAACTTAGAGAAGTGGTTGCAGACTCTAATTATATTTACTGGCTTACTAAATTATTTTTATTTTGGCTATTTTTTTTTCTGGTTCTTTCCATTCTCTTCTCTCCACTAACTGTAAGTTCAGGCATTTATTTTCAGGAAAACTTTATTACTACTTAGCAAGCAGAACTTACTGCAGTTAAGTCAGCTCAAATGAAATAAGAACTGACCTGAATGTATTTACAGTTCTCTCTGATGGAAAATGCAAGTTTCTGAGCATTTGCCCCTCTAGAGCTTTTAGCTCAAATATAAAATACTCTCTCTATTTATAATACTTTTACTTGTGTAAACATACTCTAAAAAAGCATTTCATTATTATGAGGTCTGTACCAAAATACTGTCCAATGGCTCTTATAATAAATAGCAAATGCTGGACAATATCATTAGTTGTCTGTTCAGCAAATTCAGTGCTGTGTGTGAATTTCAGAAAACTTACAGAAGTGTGATGCATTTGTTTGTTTATTTTAAATTGCCCCTATGTGTGTTTTTATCTGGTCATGTCCTGCTTAAATTAACTTCACCTTTGTTATGATTTCTACACCTCTTACATCTACAG
Seq C2 exon
GAGTGGATAGATGTAAAATTAAGATGGAACCCTGAAGATTATGCTGGAATAACATCTATTCGTGTCCCATCAGATTCTATTTGGATTCCAGACATTGTGTTATATGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021:ENSGALT00000004776:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.9=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]