GgaINT0030248 @ galGal4
Intron Retention
Gene
ENSGALG00000003021 | CHRNA5
Description
neuronal acetylcholine receptor subunit alpha-5 precursor [Source:RefSeq peptide;Acc:NP_989746]
Coordinates
chr10:3133984-3135315:-
Coord C1 exon
chr10:3135271-3135315
Coord A exon
chr10:3134094-3135270
Coord C2 exon
chr10:3133984-3134093
Length
1177 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TACACCTCTTACATCTACAGGAG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GATGAGAAGAATCAACTGATGACCACGAATGTCTGGCTGAAACAG
Seq A exon
GTATGTGTAAAATAGCAGTGAATTCTGAGGTTTCATAACTGCAAATCGAAAATTGGATGCAACTTTCCTAAATATTTGTTTGCTCAGATGCATTGGTTCCTACTTTTCATAGTATGTTTACATTACATCACTGGAAATGCTTGAAAGGATTAATTGTTGTAAAATTCAGTTAAAAAAAAAAAAAGAAATATGTTTTTAAGATGTACTTTATAAAAAGAATTCTGAGACTGCGTTGAATGCTGCTTAATAGACCAAGGTGTGTGTTATCACCATGATGAAAGTCACTGCCTCCGTAAAACAAGTTTTCTTTCAAGAGCTGTGTTAAGAGAAGCATGAGGGGTTTGTGTATTTTTTTTTATATATTTGTTTTAAGATATGTCTCTTGTCAGACATTTAGTGAATAACTACCACTGAAGTTTTCACTTTCAGAGTTGTATGTACTTGCTATAAAAAGATGATTTTCCTCATCACAGCATTTGTTTATGGGCAAGAGGAAGCTACGGGCTTGGTAATAATCCAAGTCCCATGCTAAACTTAGTGGCCACTATTAGCCTGGGAAATGCTTCTCACAAATCATTCTTAATTTAACTTAGAGAAGTGGTTGCAGACTCTAATTATATTTACTGGCTTACTAAATTATTTTTATTTTGGCTATTTTTTTTTCTGGTTCTTTCCATTCTCTTCTCTCCACTAACTGTAAGTTCAGGCATTTATTTTCAGGAAAACTTTATTACTACTTAGCAAGCAGAACTTACTGCAGTTAAGTCAGCTCAAATGAAATAAGAACTGACCTGAATGTATTTACAGTTCTCTCTGATGGAAAATGCAAGTTTCTGAGCATTTGCCCCTCTAGAGCTTTTAGCTCAAATATAAAATACTCTCTCTATTTATAATACTTTTACTTGTGTAAACATACTCTAAAAAAGCATTTCATTATTATGAGGTCTGTACCAAAATACTGTCCAATGGCTCTTATAATAAATAGCAAATGCTGGACAATATCATTAGTTGTCTGTTCAGCAAATTCAGTGCTGTGTGTGAATTTCAGAAAACTTACAGAAGTGTGATGCATTTGTTTGTTTATTTTAAATTGCCCCTATGTGTGTTTTTATCTGGTCATGTCCTGCTTAAATTAACTTCACCTTTGTTATGATTTCTACACCTCTTACATCTACAG
Seq C2 exon
GAGTGGATAGATGTAAAATTAAGATGGAACCCTGAAGATTATGCTGGAATAACATCTATTCGTGTCCCATCAGATTCTATTTGGATTCCAGACATTGTGTTATATGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021:ENSGALT00000004776:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.9=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]