GgaINT0031283 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:21921124-21923408:-
Coord C1 exon
chr9:21923285-21923408
Coord A exon
chr9:21921134-21923284
Coord C2 exon
chr9:21921124-21921133
Length
2151 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
AATAGTCTAATTTTCAGCAGTGG
3' ss Score
1.63
Exon sequences
Seq C1 exon
GATATAGATGAGTGTGCAGAGGTGAATGGAGGCTGCCAGCAGGGCTGCATCAACACCCACAGCTCTTTCCACTGCCACTGTTGGGCAGGATACAGGCTGCACTCTGATGGGCGCACGTGCTTGA
Seq A exon
GTGAGTATATGCTGCAAGACATGGTTATATGTTTTTCTCCTATGTTCTTGTATAAGTGCAAGGGTTTGTAGATGGGCTTTTCTGCCCCAATTTCTCCTACTCTTTCTTCGTCTTTTTTCCTATTTTTTCTGAAGAGACACAAACAGCAGATAGAAAGCTCTTTTGGTGCTGTTCTTCTGACCAATCAGTCCCAGAACAGATCTTGTGTATTTGATGACAAAAACAAAATAAAAGAGTGGGATTGCCACCCTAAAGTTGACTTCAACTTGACCCACAGTAGGTGAGATCTCCATTAGACTGAACAGGCTGTGGATCCTGTGGGTTTCCCAGGTGTTTCCATGATCAGAGGGAAACCATCAGCTCTGCTGGGAACTATTGACAATGAAGGAAAATCTCTGACATTTTGAATCTGTTTTCCTGAATCTCTGAATCTGTTTTCCAGTGAGTAGAGCAGAAAATCTCCTTTGGAGGACCCAGAGCAGAGGCTAAACTTGTGAATTATGAAAATACTTCTAGAAATATGGTGCTATGGGCTGGTAGCTGCAGAGGGAGTGTAAAAGGCTAACGAAATACTGACGTATTGTCAAGTTTGCACACAGAGGTCTTCTCTGTTTTCAGAAACTGCTTGGAAAGAAACCTTTCCCATTGCCACTTCTCTTCAATCTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTAAAGCAGTAGCACAAATCTGTCTGCTTTTCATTTAGTTATTAGGCAAAACGAGAAGTATGCATGGGGTGAGCTGGAAAGTCTCCTCCAAGGCATATCACAGGAATGTTTAGCTTGTGCTAATCATTTTAGCTCACACAGGAGGTTCTCACACATACGAAGATGAGAGTTTAGAGCTTGTTGGTTCTGCTTTTTGCTGCAGGTTGATAATTTGGGTGCTATAGATTTGTGATAACTCCTCATTCCTACAGTAGGTCTGTCTCCTTTGATCCATTCTTGCATTTAAATATGTCTTAAAGGTTTACATCATTCCTGTTTGTCAGAAATATGTCTTAATCTGCTGCAGTCGTGTTTGTAGTGGCTCTGTTACAAGCCATACTGAATTCCTCTTTCTTTGCTCAGTGAGAAAAAGCCATGCTGTATTTCTCTACGGCACAAAAAACAATAAATGAAAGTCAACAACAGAAGTTGCAAAGCAAACCAATTTGTTCTGTTTACATCATATGGAAGATCTCTCCTCTTGATCAGAAGAATCCCATTCCAAGCATTAAGGAGTGAAAAACAGTAGGGAGAGGGATTATATGGTCCTAATGATGTAGAGCAATGGTCATTTCTGTGTTTGTTGAAAAGACAAGCAGTTATGTCATTAGCAATAAATGTTTTGCTTCTTACATTGGACTCTGAGCCCTGAAATGAGAGAGGAAGAGTTAGTTCTGCATCTTGCTTAGAAAATGCATATGCATATACATACTCTCATTGTATTGCATTTAAAACGGTACAGAAGTCAAGTTGTCAAGTTCTGCAAAAAGAATGAAAATATTCTGCCACTTCAGCAGAAGAAAAGAGCGTCATTTGTTTGAATTTTGAAGCCTGATTTCAGGTAATTTGAGTACAGTCAAGTGTAGTCAGACCACATCTGCAGAATCAGTTCACTCACAGTTTTGCCATTGTTTCTGTACTGGAGTGAATTCCCTTGGTTGTGCTTAAATTCAGCCAAATATGTCATTCATCATTTCTTGTATTATCACAGCAATAAATTTACTGATGCACCCAGAACACAAAATGAACTCACGTTCAGACTGCGGTCATAGCATTTTTTTCTTAATTTAAGGAACTTACCATTTCAGGTTTGTTGGGTTTACTGCATACAAAGAATTGCAGCATTTTGATAATGAACTGCAATTAAAAATATGGCCAAGTCTGAATCTTTTCTTTACTCTCGCAGTCGGGGAGAGAATGCGTGAGAAAACACAAAGGTGTGAGAAATAAATTAATTTAAGGCAAAAGCAAAATGCCTCATATTTACCTAGAAGCAGATTTGTTTTCCTATGAATTACAAGAAAAGAGAGAAATTCATCTCTCTCTGATCAGATATGATTAGGTATGACACAAAACTGAAAGATGGGATGTTTGAATTGCTTTGCTCTCTCTGAATAGTCTAATTTTCAGCAG
Seq C2 exon
TGGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]