GgaINT0031312 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:21875347-21876575:-
Coord C1 exon
chr9:21876447-21876575
Coord A exon
chr9:21875473-21876446
Coord C2 exon
chr9:21875347-21875472
Length
974 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GAAGTCTGTGTTTCCTTCAGCTT
3' ss Score
7.62
Exon sequences
Seq C1 exon
GGTGTCCAGAAGGTACTTACGGTTCAAACTGCCAAAAATCCTGTAAATGCATGAATGGAGGCCATTGCGACCCAGTGTCGGGAACTTGTGATTGCGCGCCTGGTTTCATTGGAGCCGACTGTAGTAAAA
Seq A exon
GTAAGCCAGTATTCATGTTCTGTTTCTTTCAAAAAACAGTAGAGAGAATAATCTGTGTAAGAATTTGTCAGTATAAAAACAGACAGATTGCAGTTACCTCCTCCTTGAACTGTAAATTGGGATTCCAGCTTTGTAAAAATTCTCTTGCAAAATATTTTCCTTCTCTTCTGTGTGAGTAGAAGCAAGGACACTCATCCCAGGATTACAATCTACTTGCCCAAAATTGTTTCTAGAGCCAACTCAGCATGAATTGCTCAAGTTCCTTCTTCCTGTCCAAAATTTCTAGGTTGAGAAATTATCTCAATATTTTGTTTCACGCTACGGTGCCATTATTTTCAATAAATGGGAAAAAGATCAAGTTTTGTCATGGCAAAACTGGTAAAGACTCCATGGCAACACTTCTTCTACTTCTCTATTTCAGGGCTAAATCATGTGGCTGAATTTCTGTGGTATTTCCAGAGCTATGATCTCCTAATATGGATAAATACAGAGCCTTTGGGATTTCCACTTGCTATACCTGTACCAGCCGTAGAGGTTTCAGTGCTAATCAGAGCTAAACTGATGTTTTATCATCTTCAGTCCCTTTCTGAAGCTTCTTTTAGCTTATTCACAGAAAGACAATGCTTTAATGCTTAGTAGTTGGTAGCTTTGCTCTTCAGCATAGGAGAACATCATACTAAGAAAGGAAAGAGGTCTTTAGCTTGAAGCATGAGCAGCTGATATGACGTTTGCCTTACTGGGGGAAAACCTACTAAATATTTCATGTGAAAGCATGGATTATATTTATAACCTAAAAAAAAAGATTTCAGAGGAAGAGGCAGTCATGTCTTTGGATGGGGTTTGTTTTCATAGTCGTTATGAAGTACATCAGATGGAACAAAGAGGAAGCCAACTCCATCTATAGGATCCTGCATTCGTTGGAAATGAAAACTGGCATACCCCAGGTGTTTAACAGAAGTCTGTGTTTCCTTCAG
Seq C2 exon
CTTGCCCAGAAAATCGATACGGGAAGGACTGCGCCCTGTTCTGTGCATGCGGTAAAGGTCATTGTGACCCACGGACTGGCAGCTGTACCTGTCCTCCTGGCCAAATGGGACCTGGCTGTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTTACGGTTCAAACTGCCA
R:
CTGACAGCCAGGTCCCATTTG
Band lengths:
240-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]