MmuINT0097678 @ mm10
Intron Retention
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154267934-154268704:+
Coord C1 exon
chr4:154267934-154268062
Coord A exon
chr4:154268063-154268575
Coord C2 exon
chr4:154268576-154268704
Length
513 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TCACCTGCCCCTCTCCACAGCCT
3' ss Score
11.2
Exon sequences
Seq C1 exon
GATGCCCATCTGGGCGCTATGGGCCAGGCTGTGAACAAATTTGTAAGTGTCTCAATGGTGGGACCTGCGATCCAGCCACGGGAGCCTGCTACTGCCCTGCTGGGTTCCTTGGGGCCGACTGTAGCCTTG
Seq A exon
GTGAGAAACCAGGTTGTGAGCCTGGGTAGTATATTGCTGAGTTTCTGAGGAAGGAGGCAGGGCCCTGCTGGCCAGCCTACGGGAGGACAGCCCCCTGCCCACCTGCTTCCCGGACTCTCGAGTTCCCTGTTAATTATCTAAGCTAGAGTGGCTTTGAGGACGGTGTGAGGGCATCAGTGTGACCCCAGAGGACTCCAGCTTCTGGCCAGCTCTGTCCCAGATAACTGAGCACAACCCTGTGGCCAAGCATCCTGCCCAGGAAAGGGACTTTCTCCTGGATCATATGCAGACTTTCCCATGTGGAATCCAGGCAGAGCTGGGGTGTTGTGGCAGTGTGTCCCTGTAGAGATGGCCTGGGCCCAGCTCCCAGCAGAGCCTATTCATGAGGAAGATGGGGGATGCTGGGAATTGGTGGCTTGTCCCTGTCTTCTACTGTCCTGTCACTGGGGCTGGTACAGCCTAGGATGGATGTAGTCAGAATGGAAGCAACTACTCACCTGCCCCTCTCCACAG
Seq C2 exon
CCTGTCCACAGGGTCGCTTCGGCCCCAGCTGTGCCCACGTGTGTACATGCGGGCAAGGGGCGGCATGTGACCCAGTGTCGGGGACTTGCATCTGTCCTCCCGGGAAGACGGGAGGCCATTGTGAGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751:ENSMUST00000030897:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(32.6=31.8),PF079748=EGF_2=WD(100=65.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGGGCGCTATGGGC
R:
CACAATGGCCTCCCGTCTTC
Band lengths:
246-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types