GgaINT1017739 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1025651-1026161:+
Coord C1 exon
chr21:1025651-1025779
Coord A exon
chr21:1025780-1026108
Coord C2 exon
chr21:1026109-1026161
Length
329 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GAAGGTGTCCCTCCCACCAGTGT
3' ss Score
6.06
Exon sequences
Seq C1 exon
AGTGCCCTGTGGGCTGGTATGGCCCCGGCTGTGAGCGGCCGTGTGAGTGCAAGAATGGGGCGCGGTGTGAGCGCACCACGGGGACGTGCCACTGCCCGGCGGGATACATTGGTGCTGACTGCAGCATTG
Seq A exon
GTGAGTGTATGGGAATGGGGTTGAGTGGGAGGGGGGGGGAAATGGCAGCATGGTGACAGCTCCCGGTCTCCCTGCTTTGGTATATGCTGTGGGAGGGCAGCTGCTGCTGATCTCATTTGCTGTCTTAGCACTGGAAACACCGTCTTGCACCATTTGTTGAGTGCCAAAACGATGTCTCCATGACACATCATCAGCTTTTGCATCGTGCCATCGGGGTATGGCTGCCTCTCTGCTTCTCCGGCAGAGGGGAAATGCAAAAGCTCTGCCCTGCAAGCACAGCCTGCAGGCGCTGCGGTGATGAAGGCAGCTGAAGGTGTCCCTCCCACCAG
Seq C2 exon
TGTGTCCCACCGGCCGCTATGGTACAGACTGTGCACAGCTGTGTGCCTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=65.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]