DreINT0014418 @ danRer10
Intron Retention
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41110282-41110978:-
Coord C1 exon
chr11:41110850-41110978
Coord A exon
chr11:41110384-41110849
Coord C2 exon
chr11:41110282-41110383
Length
466 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GCTCTTCCTCCTGTGTTCAGCAT
3' ss Score
7.86
Exon sequences
Seq C1 exon
CGTGTCCGCAGGGTTTGTACGGCTCAGGCTGTGAGCATCAGTGTGAGTGTCTGAATGGTGGAGTTTGTCTCTCAGACTCGGGATCCTGTCAGTGTCCAGCCGGATTCATTGGAGCTCAATGCAATCAAA
Seq A exon
GTGAGTTAAGCACTGGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATACACACACACATACACACACACACACACACACATACTTCTGTGTGTGCAGCTTATGTGGTTTACAAGGGGAACACAAAGTTGAATAATGGCATGGCTATGACTTACTATAACTTTACTCTATTAAGGTGGTTTACTGGGTCACACCTCCTGTCCCTTTAATTCAAAACGTTTTAAAATCATACTTAAAGTCTTTTGATGTTTAGATTATGCCACAGGCTTCCATTGAGGGTTGTGTTTAGGGGTAGGGGTGGGGAAGAGCAATATAATAACAGTTTCTTACAGTATAAAATACATTACGTCTATGGAGTGTCCCTGTAAACCATGTATACATGTGTGAAGCGCACACACACACACACTGTATCAGCTCTTCCTCCTGTGTTCAG
Seq C2 exon
CATGTCCAGCGGGTCGCTATGGTCTGGACTGTGCTCATGTGTCAGCGTGTGGGACAGGAGTGAGGAATGATCCGGCTACAGGAAGATGCACTGCACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808:ENSDART00000109204:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.0=36.4),PF126612=hEGF=WD(100=29.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGTTTGTACGGCTCAG
R:
TGATGTGCAGTGCATCTTCCT
Band lengths:
222-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]