BtaINT0091708 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50799324-50800139:+
Coord C1 exon
chr16:50799324-50799452
Coord A exon
chr16:50799453-50800010
Coord C2 exon
chr16:50800011-50800139
Length
558 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTCGCCTTTCCTCCCGGCAGCCT
3' ss Score
9.32
Exon sequences
Seq C1 exon
GGTGCCCACCAGGGCGGTTTGGGCCTGGCTGTGAGCTGCTGTGTGGGTGTCTCAACGGGGGCTCTTGTGACGCGGTCACTGGGGCCTGCCGCTGCCCCGCCGGATTCCTTGGGACTGACTGCAGCCTCG
Seq A exon
GTGAGTGGCTGGGGTGTCTTCTCCCTGCACCTCGACAGGCAGGGCCACGCCATCCGGCCTGCAGGGCAGACAGCCCCTGACCATGTCACTCCTTGGGTCCCTCACTGGGACTGGCTGCAGACCAGGCTAAGCTGGGGGATCGATGTGGCCAAAACGTCTCCTCGGCCTGCCCTGCCTGGCCGTGTGCTGCGCCCTCGACCCGGGCTGTGTCCACCAGGAGCCCTGCAGAAGCCAGCTGGTGTCCTACTGAGAGAAGGGCCTCTCCCTGAGTCACGTGGGGACTTTCCGACCATCTGGGGCTGGGGCTGGTGGAAGTGGGTGGGGGCACCGTGAGTCACTCACTGTAGTGTGAGCCCGGCCCCCCGCAGAGCCTGCAGCCGAGAGAGACACCAGGGCAGGCGGGGCCTCAGCGGCAGGTGGCCCTGCCCTGTCTGGGCAGACAGGGCGGGAGTCTCCCCACCCAGCCTGCCCTGGCCCAGTCCTGTCCCATCCGGGTTGACAGAGCAGAGGCAGGGAGATCGAGCCAGGAGTGGCCACCCTCGCCTTTCCTCCCGGCAG
Seq C2 exon
CCTGTCCACACGGCCGCTTTGGCCCTGGCTGTGCCTACGTGTGCGGGTGTGGGCAGGGGGCGGCCTGTGACCCCGTGACCGGCAGCTGCTCCTGTCCGCCTGGGAGGACCGGCGTCCACTGCGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126612=hEGF=WD(100=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGGCCTGGCTGTGAG
R:
GTCCTCCCAGGCGGACAG
Band lengths:
222-780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development