GgaINT0031312 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19796587-19797815:-
Coord C1 exon
chr9:19797687-19797815
Coord A exon
chr9:19796713-19797686
Coord C2 exon
chr9:19796587-19796712
Length
974 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GAAGTCTGTGTTTCCTTCAGCTT
3' ss Score
7.62
Exon sequences
Seq C1 exon
GGTGTCCAGAAGGTACTTACGGTTCAAACTGCCAAAAATCCTGTAAATGCATGAATGGAGGCCATTGCGACCCAGTGTCGGGAACTTGTGATTGCGCGCCTGGTTTCATTGGAGCCGACTGTAGTAAAA
Seq A exon
GTAAGCCAGTATTCATGTTCTGTTTCTTTCAAAAAACAGTAGAGAGAATAATCTGTGTAAGAATTTGTCAGTATAAAAACAGACAGATTGCAGTTACCTCCTCCTTGAACTGTAAATTGGGATTCCAGCTTTGTAAAAATTCTCTTGCAAAATATTTTCCTTCTCTTCTGTGTGAGTAGAAGCAAGGACACTCATCCCAGGATTACAATCTACTTGCCCAAAATTGTTTCTAGAGCCAACTCAGCATGAATTGCTCAAGTTCCTTCTTCCTGTCCAAAATTTCTAGGTTGAGAAATTATCTCAATATTTTGTTTCACGCTACGGTGCCATTATTTTCAATAAATGGGAAAAAGATCAAGTTTTGTCATGGCAAAACTGGTAAAGACTCCATGGCAACACTTCTTCTACTTCTCTATTTCAGGGCTAAATCATGTGGCTGAATTTCTGTGGTATTTCCAGAGCTATGATCTCCTAATATGGATAAATACAGAGCCTTTGGGATTTCCACTTGCTATACCTGTACCAGCCGTAGAGGTTTCAGTGCTAATCAGAGCTAAACTGATGTTTTATCATCTTCAGTCCCTTTCTGAAGCTTCTTTTAGCTTATTCACAGAAAGACAATGCTTTAATGCTTAGTAGTTGGTAGCTTTGCTCTTCAGCATAGGAGAACATCATACTAAGAAAGGAAAGAGGTCTTTAGCTTGAAGCATGAGCAGCTGATATGACGTTTGCCTTACTGGGGGAAAACCTACTAAATATTTCATGTGAAAGCATGGATTATATTTATAACCTAAAAAAAAAGATTTCAGAGGAAGAGGCAGTCATGTCTTTGGATGGGGTTTGTTTTCATAGTCGTTATGAAGTACATCAGATGGAACAAAGAGGAAGCCAACTCCATCTATAGGATCCTGCATTCGTTGGAAATGAAAACTGGCATACCCCAGGTGTTTAACAGAAGTCTGTGTTTCCTTCAG
Seq C2 exon
CTTGCCCAGAAAATCGATACGGGAAGGACTGCGCCCTGTTCTGTGCATGCGGTAAAGGTCATTGTGACCCACGGACTGGCAGCTGTACCTGTCCTCCTGGCCAAATGGGACCTGGCTGTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=29.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTTACGGTTCAAACTGCCA
R:
CTGACAGCCAGGTCCCATTTG
Band lengths:
240-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]