GgaINT0031392 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:839328-840428:+
Coord C1 exon
chr9:839328-839512
Coord A exon
chr9:839513-840306
Coord C2 exon
chr9:840307-840428
Length
794 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
GATCTCATTTCTTATTGCAGTGG
3' ss Score
6.47
Exon sequences
Seq C1 exon
ACTTACACGGGATCTATCTTGGTAGCAGTGAATCCATACCAGCTGCTGCCTCTCTACACAGTCGATCTTATCAGGCTCTACTGCAACAAGAGGATTGGAGAGCTGCCACCTCATGTCTTTGCCATTGCAGACAACTGTTACTTCAATATGAAGAGGAATAAGAGAGATCAGTGCTGTGTGATCAG
Seq A exon
GTGATTGTACTCATGATGTGTGGCAGACACCAAATCTGGCATGTTTTTGGGGGACTTTTGCAGACACAGGAGACCTTTCAAATGGAAAGGCACAGGTTAAGACTAGAGGTAACAGCAAGAAAATGTTCTCTTCCCTGCTACTTCCTTTTTTTTTTTTTGGTCACAGCTACAGAAGCTGGAACATAAACAAGAGATTTCTGAAGTCTGTTGTTTTCCTCTAGACTCTGAATGTGATGACATATTCTACGCATATGTGCCTGTGTGATGTTAGGCTGCCTTTTACCTTGGGGACAGGACACTTGTGTTAATTATATTTTCTGAACACTGAGATTTCCTGAAGAAAACACTGTCTCTGCTAATATGAAGATGGAAGAAACTACAGTATAAATACATGACATGTATCCATATTATGCTAGTCATCAGTAGAGAGAACAGAGAGTCTCATTGCAGTGTGATCATGGTACATCAACTGAGTTGCCTCAGATAAGACTAACACTGAAAATCTGATAATGCTTTAAGGAAAAGCAAGTGGTGATTTAATTTTTTACTGGTACAGAATGTGTTCCATGGATTTGCTCATTTTTAATTAGAGGGAGAATTTAGTCCTCAACCTTAGTCTAAAAAACACTTTACACTTTAGCAGATAAGATGTTGAAAAGCTAAAATTGCATAGCCATCAATGAAAGACAACCTGATCTTCACAGCATAAAGTAGGATTTCACCTTGGTCTGCCATTTGCCTCCCTAGCCAAAAAAAAGAAAGCAAACCCTTCATGATCTCATTTCTTATTGCAG
Seq C2 exon
TGGAGAATCTGGAGCTGGGAAAACTGAAAGCACTAAGCTAATACTACAGTTTTTGGCAGCTGTCAGTGGCCAGCATTCCTGGATAGAGCAGCAAGTCCTAGAGGCCAACCCCATTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGGATCTATCTTGGTAGCA
R:
CTTCCAGAATGGGGTTGGCC
Band lengths:
303-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]