RnoINT0097455 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24800492-24802051:-
Coord C1 exon
chr18:24801867-24802051
Coord A exon
chr18:24800614-24801866
Coord C2 exon
chr18:24800492-24800613
Length
1253 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCTGGCACTCTTTGTCAGTGG
3' ss Score
4.38
Exon sequences
Seq C1 exon
ACCTACACGGGTTCCATCCTGGTGGCGGTGAACCCATTCCAGATGCTGCCCCTGTACACCCTGGAGCAGGTACAAATCTACTACAGCCGCCACATGGGCGAGCTGCCTCCCCATGTCTTTGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGTTGCATCATCAG
Seq A exon
GTGAGGCTCAGACGCCATTCCTAGGGCACATGGTCAACAACGGCCCCAGAGGATCCCAGAAAGAAGCCTCCTCCTCTCCCTCTTCCTCCTCCTCCTTTTCTTCTTCTTTTTCCTCTTCTTCCTCTTCCTCTTCTCCTTTTTGATTCAATTTTGGTGTTGTTTATTTTGGTTTCATTTTGGGACTGGACCTTACTGCGTTTTTGAGAGCTATGTCTCTCATAGCGCTGGCTGGTTTGGAACTTGCTCTGTAGAACAGGCTGGCCTTAAACTCATGGAGATCAGCCTTTCTGCCTCCTGAGTACAAAACTAAAAGTATGCAATGTGCCCAGCTCAAACTTGACCTTGGAGTGAATATTGAAGCCACATAGCAGCTGGCTCTCCAGGACAGTAAGCAAGTCCCGAGCAGAGCAGTGAACAGAGCAGTCCCGAGCAGAGCAAGTGCCCAACAGAGCAGTGAACAGGGAAAGGACTTGCAGGGTCTTCATGGTGGGGAAGGCAGGGTATGAGGCAGCTGCTCACACTGCGTCCTCAGTCTGGAAGCAGAGAGATGGATGATGGCGCTAAGCTTGACTGTTCCTTTTCATTCTGTCCAGAACCCCAGCCTGTGGAAATGTGCCAACCATATTTAGGATGTGTCTTCCCACTTGGAGTAACCTAATCTAGATAATCTCACAGACACACCATACCAGAGGCTTGGCTCTTTGGTGATTCGAGAGCCTGCCAGGCTGACAGTCAATAGTAAACATCCCAAGGTATTGGAATTCTGATTGGGTGTAGCTAAGGGAACCTGGGCGCCTAGATTTCTGTCTGGATACAGATAACACTGGCCTGGGAGCCATACTTTCATCAGAAGGACACTGAGTCACCTTACTTGTTCTGTCAGGTAGCCCTGGAATAACCCAGATCAGAGTGTGCCAAGGGTCTTTCAGTCTCGAAGGAAAGAAAAGACAATGCAATAATTTATGCCAGGGATGTTCAATTTTTTGACATTGTCTTTTACAAATGTATTGAGCTACATTATAGTTATTCTGGAACACATGTGTCTGTGTCATAGATAGTCTGAGATGCTCAGGGGACTTCAAGCAAAGGCAGTATGGAGTTTCTTCACAGGGAAAGCGTGTCTCTGTCAGCATGGCCCAGGGGACAGGATGGGTGAAAGTGGAGGGCATGGAGGCCATTTATAGAGAGTGGAGAGGCTCTAGATAGTGGTAAGTCTCTGCCTGAGGCCTCATTTTTCTGGCACTCTTTGTCAG
Seq C2 exon
TGGTGAGTCTGGCGCTGGGAAGACCGAGACCACCAAGCTCATCCTTCAGTTCCTGGCCACAGTCAGCGGCCAGCACTCGTGGATCGAGCAGCAGGTCCTGGAGGCCAACCCCATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(64.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACGGGTTCCATCCTGGT
R:
CTTCCAGGATGGGGTTGGC
Band lengths:
305-1558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]