GgaINT0031424 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:866563-867894:+
Coord C1 exon
chr9:866563-866744
Coord A exon
chr9:866745-867766
Coord C2 exon
chr9:867767-867894
Length
1022 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ACATGGCTGTGTCCTTCCAGAGT
3' ss Score
8.41
Exon sequences
Seq C1 exon
AAGACCCTGCCGTCCTGTCCTTCAAGAAGGGAGACTTGCTAATCTTGACCGAGGACAAAAGGCTAGATGCAAACTCTGGTTGGATCCATGCCCAGAATGACAGGACAGGCAAAACGGGGAATGTATTTCTGGAGGAGATGTACATCATTCCTTCACTCACAAAGCCCTCTGGTCAAGTACTG
Seq A exon
GTAAGAAAAGCTGTACAATCTCTTTGAAGAGACTGGGAGATAAATAACGGTTAACTATGATTAAACTTATAAGTGGAAATTAATTGTTCTTCCAAAGTCAGACAAGTACTATATGTCCCACTGATACAAAAGCATTTCTTTCTGCCATATCTGAACTGTCTGTAAACAAAATTAAATCTAGCCCAAACTCCAAGGAGAAGGCTGCAGCTTTACAGAGCAATGACTTTCAAAATAATGGTCTGTTTGGTATCAGGGAGTCCAGTACCTGGAATTGGTAGCAATTGATCATAGATGTTAAGTTGAATTTTCCTGCATAAAAGCAACATTTTTAATAGAATCACAGACTCATAGAATGGCCTGAGTTGAAAAGGACCACAATGCTCATCCAGTTTCAACAACCTGCTATGTGCAGGGTCGCCAACCAGCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTGCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCAGTGCGTCACCACCCTCTGGGTGAAAAACTTCCTCTTAATATCCAACCTAAACCTCCCCTGCCTCAGTTTAAAACCATTCCTCCTTGTCCTATCACCATCCACCCTCGTAAACAGATTTTTCTGCAAAGCATAACAGGGTGCTTTAAAAGAACAAGTGCTTCCAGAGAGTAAACACAAGGTTTCCCATTGATCACTGCTAATAATTTTTTTCTTCAGTTTTGGAGACAGTATATTGGATGTTGTGCTAACAAGAAGCTCAGTAAGTGGGAAAAGAAAAAACAAAAAACAATGCCGGTGATAAGCAGGTGTAGTTTGAACACACTGTGCTGTAGATAATCACACATCTTGGTGGCCACTGCTCTTAGGTCTATGAAGTCACTTCCCTGAGTCTCTCACCCCCTGCAGCACAGAGTACACCCCTTAGTATGCACCACCTGCTTTTATATGCTGAGTAACACTGGACAGCTGTGCAGAGGCCTGTCCATCTGTACATGGCTGTGTCCTTCCAG
Seq C2 exon
AGTTTGCTAATGATGTCTCCAGACCAGAGGAGGACAGCATCGCAGAACTCCTACATAGAGGAACCTGATGAAGAGGATCTCAAAGTGAAGCCTTACACACTGGAGGAGTTCTCCTATGAACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(93.2=67.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCCTGCCGTCCTGTC
R:
CTGAAGTGTTCATAGGAGAACTCCT
Band lengths:
310-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]