HsaINT0108976 @ hg19
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128387220-128388483:+
Coord C1 exon
chr2:128387220-128387401
Coord A exon
chr2:128387402-128388352
Coord C2 exon
chr2:128388353-128388483
Length
951 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
CAGGCCTGTGCCCCCTTCAGAGC
3' ss Score
6.8
Exon sequences
Seq C1 exon
ATGACACCACCCTCCTGGCCTTCAAGAAGGGGGACCTGTTGGTCCTCACAAAGAAGCAGGGGCTGCTGGCCTCTGAGAACTGGACCCTCGGCCAGAACGACAGGACAGGCAAGACGGGGCTGGTGCCCATGGCCTGCCTCTACACCATCCCCACGGTCACTAAGCCCTCGGCACAGCTGCTG
Seq A exon
GTAACTGGCACGCTCCCCTGTCCTCAGCCTGGGTACCCGAGGTCAGGGTGGAGCAGTCCTGGGATGCCTAGTTGGGAGGCCTAGCTCAGGGCCTGCAGCCCACCTAGCAGAGGCCAGGAGGGCCACCCGGGCAGCCCCCACCATTCCTGCGGCAAGGTGTGTGTGCAGTGCCAGCCCAGCTCTTGGTACTTAGTAGGTCCTCAATAAATGGGTGTTCCCTCCCTCTTCCATCATGGGGGTGTCCGGGGGACAAACCCAATCTTTCTCTGCCTCATTTACACTCTGACCCAGGGGGACTCAAGTCTCTCCCTGCACAAGGGAACCACCCACCCCAGCCCCCAAGACCAGCCTCTCCGGAGGCAGGAATGGCAGGCATTGCAACATGTACATACTGAGTGCTGAGTATGTGCCCTGTGCCTGTGGTACGAGTCTGGGCATAATAGCAGCTCCACCCTCAGGGCAGACATTTGGGCAGATAATGACACATGGATGGCAACTGTGCAAAGTGCCACCAAGGAGAGGAACAAATAATAGGGTGGGGAACTTACCCTGTCTGGGAAGGCATCCCCGAGGGAGGGACATTTGTGCTGAGGCCTGAAGTTGGTGGCAGACTAGGCAGGCAGGGCTGGGGTGAGAGGTGGCCCCATGGAGAAGGGGAGCTGGGGAGCTGGGGGTCTGAGAAACCCAGAGTGCCGTGGCCCCCAGAACGGGTGATGTGGGTGCCACAGCCATTGGCACTCACCCTCCCAAGGGAAAGGAGACAGGCACCAAGAGGTAGAGTCATGGTCCTGGGTCACACGGCAGGTGACAGGGGTGTGGGTAAGCCCTGGCCTGTTCAGCCCTGGGCCTGACCCCTCCCAAGTCACTGAGGCTGCCAGGCCGGGAGGAGCCTGCAGGAAGGGCCTCATGGGCGGTGGCTCCTGGGCACCCACAGGCCTGTGCCCCCTTCAG
Seq C2 exon
AGCTTGCTTGCCATGTCACCAGAGAAGAGGAAGCTGGCGGCTCAGGAGGGGCAGTTCACAGAGCCACGTCCTGAGGAGCCACCCAAGGAAAAGCTGCACACCCTGGAGGAGTTCTCCTATGAGTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-MYO7B:NM_001080527:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.420
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(83.9=77.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACACCACCCTCCTGGC
R:
CTGAAGAACTCATAGGAGAACTCC
Band lengths:
313-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)