BtaINT0098339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4827045-4828271:-
Coord C1 exon
chr2:4828090-4828271
Coord A exon
chr2:4827176-4828089
Coord C2 exon
chr2:4827045-4827175
Length
914 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
CTGTGCACCCCCACCCCCAGAGC
3' ss Score
7.5
Exon sequences
Seq C1 exon
AGGATTCCACCCTCCTGCCCTTCAAGAAGGGGGACTTGCTGATCTTGACAAAGAAGCAGGGGCTGCTGGCCTCTGAGAACTGGACCCTGGCCCAGAATGACCGGACCGAGAAGACGGGACTGGTGCCTACCTCCTGCCTCTACACCATCCCGACAGTCACCAAGCCCTCAGCACAGCTGCTG
Seq A exon
GTAACTCACGTGCTCGCCTGCCCTCAGCCTGGCACCCCTGGGCACCTGTGGAAGAGGCTGAGAGGCCAGGCCTGGGGTCCTAGCTCAGGTGCCTGGGCCCACCCCCCAGAAAGCCTGGGTGTCATGTCAGCCCTGCCAGCCCTGCCGCCCCTCTGGGAGAGGCAGGAAGTGCTTGTGCAGTGAGTGGCTGGGGTGTCACCTGGCACTCAGCAGGTGCTCAATCAGTGCGCATCCCTCCCACCAGGGAGCATCCTGGGGGTAAACCCATCTTGCCTCAATGTCGTTTAAAAAGCCTGACCCAAGGGGGCTCAAGTCTCCCTACCCCTGACAACCACTCCACCCTAACCCCCAAGACCAGCGCCCCCAGCCCCCGCCCAGGGAGACAGGACAGATAGGCCTCCCAAATGCATGTATGAGTGCCAACTGCATGCCCTGTACCACAATACAGTATCAAACACCGTAGAATCTCCACCTTCAAGGAGACTTGGATGAATGACGACTTGATGGCAAGTGTGCAAAGTGCCACCAAGAAGCAGCACTTGTTACAGGAGCAGATTCTAGGAGGGGGCTCACCTTGTCCAGGAGGACTTCCCTGAGGGACAGACACTTCAGTGACAAGGCCCGAAGGAGGTGGGGGGCCAGGCCAGCAGGGCCAGGGTGAGGGATACCCCTGAAGAGAAGTGCCCCAGGAGAGGGGAGCCTGGTGGGCCTGAGCGCCCCCTGAAGAAAAGGAAACAGGTTCAGAAACATCGCGTCACTGGTCCTGGGTTCTAGAGCAGGTGACACAGGACGGGTAGGTCCAGGCCTGTCCAGCCCTGTGGCCCGGCCCCTCCCAAGTCTCTGAGGACACCTGGCCAGGAGGAGCCCATGGGTGGGGCCTTCTGGACACCATACCTGTGCACCCCCACCCCCAG
Seq C2 exon
AGCTTGCTGGCCATGTCACCGGAGAAGCGGAAGCTGGCGGCCCAGGAGGGGAGGCCCACAGAGGCTCCCCCCGAGGAGCAGCCCGAGGAGAACCTGCACACCCTGGAGGAATTCTCCTATGAATTTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(94.0=77.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCACCCTCCTGCCCTTC
R:
GAATTCCTCCAGGGTGTGCAG
Band lengths:
294-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]