BtaEX0023600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4825668-4828271:-
Coord C1 exon
chr2:4828090-4828271
Coord A exon
chr2:4827045-4827175
Coord C2 exon
chr2:4825668-4825835
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTGTGCACCCCCACCCCCAGAGC
3' ss Score
7.5
5' ss Seq
TAGGTGCCC
5' ss Score
1.84
Exon sequences
Seq C1 exon
AGGATTCCACCCTCCTGCCCTTCAAGAAGGGGGACTTGCTGATCTTGACAAAGAAGCAGGGGCTGCTGGCCTCTGAGAACTGGACCCTGGCCCAGAATGACCGGACCGAGAAGACGGGACTGGTGCCTACCTCCTGCCTCTACACCATCCCGACAGTCACCAAGCCCTCAGCACAGCTGCTG
Seq A exon
AGCTTGCTGGCCATGTCACCGGAGAAGCGGAAGCTGGCGGCCCAGGAGGGGAGGCCCACAGAGGCTCCCCCCGAGGAGCAGCCCGAGGAGAACCTGCACACCCTGGAGGAATTCTCCTATGAATTTTTTAG
Seq C2 exon
GGTCCCCGAGAAGGAGACTGTCAGCAGAGCCGTGCTGCCCCTCGCCCGAACCCGCGGGCAGCTGTGGGCCCACTCGGCCGAGCCCCTGCGACAGCCACTGCTCCGGCGCGTCCACGCCAACGCTGAGCTGCGGGATGCTGCCTGTCAGATCTTCATCGATATCCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(94.0=77.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGACCGGACCGAGAAGA
R:
AAGATCTGACAGGCAGCATCC
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development