MmuEX6000751 @ mm9
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32126474-32127757:-
Coord C1 exon
chr18:32127576-32127757
Coord A exon
chr18:32126784-32126914
Coord C2 exon
chr18:32126474-32126631
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCCTGCCCCCTGCAGAGC
3' ss Score
10.43
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
ACGATATCACCCTTCTGCCCTTCAAGAAAGGTGACTTACTGATCCTGACCAAGAAACAAGGACTGTTGGCCTCAGAGAACTGGGCTCTGGGTCAGAATGACAGAACTGGCAAGACAGGGCTGGTGCCTACTGCCTGTCTCTACACCATCCCCTCGGTCACCAAGCCCTCAACCCAGCTGCTG
Seq A exon
AGCTTGCTGGCCATGTCACCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCGGGCTCTGGAGCCACCACTGGAGGATCAGCTCACAGAGTCGCCATACACCCTGGAGGAATTCTCCTACCAGTTCTTCAG
Seq C2 exon
GGCTCCGGAGAAAGAGACTATCAGCAGGGCTGCGATGCCCATGGCCCGAAGCCGGGGTCATCTCTGGGCCTACTCCCCAGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAACTGCGGGATGCAGCCTGCCAGATCTTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'33-35,'33-34,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.091 C2=0.037
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(83.9=77.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAACTGGCAAGACAGGG
R:
CAAGGAAGATCTGGCAGGCTG
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: