RnoEX6058349 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24753926-24755144:-
Coord C1 exon
chr18:24754963-24755144
Coord A exon
chr18:24754236-24754366
Coord C2 exon
chr18:24753926-24754083
Length
131 bp
Sequences
Splice sites
3' ss Seq
CGTGGGCCTGTCCCCTGCAGAAC
3' ss Score
10.36
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ATGATGTCACCCTTCTGCCCTTCAAGAAAGGGGACTTACTGATCCTGACCAAGAAACAGGGACTGTTGGCCTCAGAGAACTGGGTCCTGGGCCAGAACGACAGAACCGGCAAGACAGGACTGGTGCCCACGGCCTGCCTCTACACCATCCCCTCAGTCACCAAGCCCTCAGCCCAGCTGCTG
Seq A exon
AACTTGCTGGCCATGTCGCCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCAGGCTTCGGAGCCACCGCTAGAGGAGCAGCTCACAGAGTTACCGTACACCCTGGAGGAGTTCTCCTACCAGTATTTCAG
Seq C2 exon
GGCTCCAGAGAAAGAGACCATCAGCAGGGCGGCGATGCCCATGGCCCGAAGCCGAGGCCATCTATGGGCCTACTCTCCCGAGCCGCTGCGCCAGCCACTGCTCAAATCTGTCCACGACAAAGCCAAGCTTCGAGATTCAGCCTGCCAGATCTTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'44-55,'44-54,45-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.037
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(83.9=77.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCTTCTGCCCTTCAAGA
R:
AGTAGGCCCATAGATGGCCTC
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]