GgaEX1038175 @ galGal3
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2300560-2302555:+
Coord C1 exon
chr9:2300560-2300741
Coord A exon
chr9:2301764-2301891
Coord C2 exon
chr9:2302398-2302555
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACATGGCTGTGTCCTTCCAGAGT
3' ss Score
8.41
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
AAGACCCTGCCGTCCTGTCCTTCAAGAAGGGAGACTTGCTAATCTTGACCGAGGACAAAAGGCTAGATGCAAACTCTGGTTGGATCCATGCCCAGAATGACAGGACAGGCAAAACGGGGAATGTATTTCTGGAGGAGATGTACATCATTCCTTCACTCACAAAGCCCTCTGGTCAAGTACTG
Seq A exon
AGTTTGCTAATGATGTCTCCAGACCAGAGGAGGACAGCATCGCAGAACTCCTACATAGAGGAACCTGATGAAGAGGATCTCAAAGTGAAGCCTTACACACTGGAGGAGTTCTCCTATGAACACTTCAG
Seq C2 exon
AACTCCTGAGAAGGAATCCATCAGCAAAGCTGTTCTCCAGAAATCTCGTGGGCACAGTCAGCTGTGGGCACACTCTAAGGATCCCTTAAAACAGCCCTTGCTGAAGGCAGCATGCACAGACCCTGATGTTCGGGACGTGGCTTGTCAGGCCTTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.279 C2=0.093
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(93.2=67.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCCTGTCCTTCAAGAAG
R:
CTTAGAGTGTGCCCACAGCTG
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]