DreINT0101045 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3163348-3164175:+
Coord C1 exon
chr18:3163348-3163538
Coord A exon
chr18:3163539-3164047
Coord C2 exon
chr18:3164048-3164175
Length
509 bp
Sequences
Splice sites
5' ss Seq
GTGGTACTG
5' ss Score
2.53
3' ss Seq
TCTCTGACTGCATGGTTTAGGCT
3' ss Score
5.05
Exon sequences
Seq C1 exon
CTGCTGATGACTCCACATTCCTGAGTTTCCTAAAGGGGGATCTGATCGTTCTGGACCAGGACACCGGTGAGCAGGTCATGACGTCCGGCTGGGCTCACGGCACCAACGACAGGACAAAACAGAGAGGAGACTTTCCCGCGGACTGCGTTTACGTGCTGCCCACCGTGGTCAGACCACCGCACGATGTCGTG
Seq A exon
GTACTGCTTTAACATCATATCCTTAATTACACATGCCCCTAAAACTTGTCCCAGAAACCTGTCCCATACGGACCCGGACTAAACTCTGCATCATTTAAATGCAATAATCAAATCTAAATAATGGGATTAAGCTAATAATTGCTGTAAGGAGAATCACATTAACAAAGGTGATGAACCCTGAGTTTAATCAGGCATGTAAACATCTTATTAGCATTGTTGCTGTTCTGACCAAAGTGCAGATGTGTAAATAAAACAGCAGTCAGTAACACAGCTACTCTTAAAAAGTCCAGCATTTGGGCTGTGTAGTGAAACGTGATTATTTTAATGCACATAATGCATTTCAATAGGACAAAAATTGCCTATAGTTTGTAATAGAAAATAACTGAGAGTTTTGCTTCCAGTTCTGACATGCAAACTTCAGATTTCAATTTAAGCCCTTAAAAATAATCCCATTATCCATGCACATGTAAAAGCGTCTCTTCTGTGCTCTCTCTGACTGCATGGTTTAG
Seq C2 exon
GCTTTTGTCACGATGACCCCAGATCAGCGTCAGGAGTCGCTCCGCATCTCACACGTCCCAGCACTGACTGAGACGGAGGAGAGGGTAAAGCCCTACACGCTGGAGGAGTTCTCCTACGACTACTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.221
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATGACTCCACATTCCTG
R:
CGGAAGTAGTCGTAGGAGAACT
Band lengths:
318-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]