BtaINT0098289 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57401162-57402173:+
Coord C1 exon
chr15:57401162-57401352
Coord A exon
chr15:57401353-57402048
Coord C2 exon
chr15:57402049-57402173
Length
696 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TCCTGTCTCTTGGTCTCTAGGCC
3' ss Score
10.05
Exon sequences
Seq C1 exon
CGGGCGAGGAGTCCGGCTTCCTCAGCTTCGCCAAGGGGGACCTCCTCATCCTGGACCACGACACGGGCGAACAGGTGATGAACTCGGGCTGGGCCAGCGGCATCAACGAGAGGACCAAGCAGCGTGGGGACTTCCCCACTGACTGCGTTTATGTCATGCCTACTGTCACTATGCCACCGAGGGAGATTGTG
Seq A exon
GTATGTGGCTGGCTGGGGGTGGTAGATGGATGGGAGGCTCCTCTGGCCCCTCCTTGTCTTATTCCCACATCATAAAATAAGAGTGGGGGATTACTGTAGATTCATGCTGTGCACCTTCTATGAAGATGATCCAGGGGTCTCATGGGACCACAAACTTAAAAGTTGGGGCAACTATTAAACTGGTCCCAGGTGGAGAGGAGCCTAGAAACTGCTTCAGATGAGGACCTGCCCCGGCTGGGGGATCAGAGGAGAGTGGCCTAGGGGATGGGAGGACGGGGATGGGGCTTGCCCTGTCTAAAAAGGCAGTGAGGTCAGAGCTGGGAAGGCAGGCCCTGGCTCCTCTGGAATCTCCCTTCCCATCCCCCCAGCCAACACTGAGGACTCGGAACCCAGCTTTCCAGATGTTTCCTGAGCCACTTCTCACACTGTGTCCCCTGCCTTGTCCAGGCTTTCTGATGACCCCACCTCGTTGAGACAGGGCACTGAGGGAAGGGTCTTAAGCCCAGCATGATGGAGGCAGTGGTAATGTCAGAGATTCCCCAGAAAGAAAGGGGCTCCCGGGTCAGACAGGCCCAGGGCCCACCCCCAAGAAGGCAGTCTTCCCCAGCCCCAGTCAAGAAGGCTGTGGGCTTTACCATGTTGATCCAGGGCCCCTAGTTGGAGAGCTGACTTCAGCTCCTGTCTCTTGGTCTCTAG
Seq C2 exon
GCCCTGGTCACCATGACCCCCGACCAGAGGCAGGATGTTATCCGACTCCTGCAGCTGCGAACGGCAGAGCCCGAGGCGCGCACCAAGCCCTACACACTGGAGGAGTTTTCCTACGACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.262
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTCCGGCTTCCTCAG
R:
TGAAGTAGTCGTAGGAAAACTCCT
Band lengths:
310-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development