GgaINT0104540 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198114656-198115523:-
Coord C1 exon
chr1:198115333-198115523
Coord A exon
chr1:198114781-198115332
Coord C2 exon
chr1:198114656-198114780
Length
552 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GACAACTTTTCATCCCACAGGCA
3' ss Score
9.72
Exon sequences
Seq C1 exon
TGGGAGAAGAATCTGGGTTCCTCAGCTTCCTCAAAGGAGATCTCATAGTTCTTGACCAAGACACAGGAGAACATGTGATGAATTCAGGGTGGGCGAATGGATTCAATGAACGAACCAAGCAGAAAGGGGATTTCCCAACAGATTCTGTCTATGTTTTGCCTACTGTCACCATGCCTCCCCTGGAGATCGTG
Seq A exon
GTAAGCTGTCTTACAGAATAGCAATACTTGATGCAAAACCTGAGGAGGCCAAAATCTTTCTGAGCAGATTAGCTCACAAGAGAGTCTTTCTGACCATAGTGTGGACCAGTATGGCTGAGAGAGGTGACGTTTTCTAAGGTAAAAGTGATCTGCTGTAATAGTATCTTAGCCTTTCTTCTAGTCTCATCACTTTGAAAACCATGAGATTATGACCTGGCATATCTATGAATCCTTTCACATCTTTCCAGCTGGTACAATTTCTTTTCAGTGTATTTAGGATTAGAAGAAACCACCACATGCATTCATAGAGCAGTAGGTTCCAAAGCACATTCTCTTCATTAGAAAATGTTCCCCACTATGGAAACATTTATTATTCTTCGTATTAGTGACAAAGAATGGCACAGAGAAATGGCACTTTTACAGTTCTTACTGTCTATTGGCTGAAATTAGTGGGTTATTTTTACTCACTCATTTCCAGTCTCTTCATTATGTAACTGCTTCCTACATATTGCATCAAGCATATGAGGTGACAGACAACTTTTCATCCCACAG
Seq C2 exon
GCACTGGTTACAATGACCCCTGACCAACGACAGGATGTTATCAGAACCTCCCAGATGGCAATTTCAGACAGCGAAGAGAGAGTGAAGCCATACACCTTGGAGGAATTTTCCTATGATTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAAGAATCTGGGTTCCT
R:
GGAAAATTCCTCCAAGGTGTATGG
Band lengths:
302-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]