RnoINT0097394 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163013693-163014519:-
Coord C1 exon
chr1:163014329-163014519
Coord A exon
chr1:163013818-163014328
Coord C2 exon
chr1:163013693-163013817
Length
511 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CCCTATCTCTTGCCTCCCAGGCC
3' ss Score
9.7
Exon sequences
Seq C1 exon
CTGGTGAGGAGTCGGGCTTCCTCAGCTTTGCCAAGGGAGACCTCATCATTCTCGACCATGATACCGGCGAGCAGGTCATGAATTCAGGCTGGGCCAATGGCATCAACGAGAGAACCAAGCAGCGTGGAGACTTCCCCACCGACTGTGTCTACGTCATGCCCACTGTCACCTTGCCACCCAGGGAAATTGTG
Seq A exon
GTATGTGGCCAGCACTGGGAGTCTCCCCTGGACCCTCCCTTGCTTCTCTTCTCACATGTGATGATTAGAGTGAAGGGTTGTAACACACTAATGATTCGTATCTTCCGTGTAGATGGTATATGGGGCTTGGGGGGACCACAGACAATGTACAGGTATCTTCTAAACTTACATCGGTTGAGGAGGGGCTTAGGGGTAGGGAAGGAGGATCATTGTAATAATGTCTGAAGGGAAATGGGGCCACAGCTAGATGAACATCTCTTTTTTCATGGATCACAGCCCAAGGATTCAGTACAGCTCTCCAGGCAGCTCCTGTGCGAGGCTCACGTGACTGGGCCACTCTCAGCACAGCATGCTTGAGGCACAGGAACTGTGGACGAGGGAAGGAAGAGCTTGGGGTCCACCCTCATGGAGACCAAGTCTCCCTGCCCCAGTCTGGAAGGCTCCAGCTGCACCAGATCCCAGGGGTCCCAGCTGAAAAGCTGACCCTACCTCCCTATCTCTTGCCTCCCAG
Seq C2 exon
GCCCTGGTCACTATGACCCCAGACCAGAGGCAGGATGTTGTCCGGCTTCTGCAGCTGCGCACAGCAGAGCCAGAGGTGCGCACCAAGCCCTACACGCTGGAGGAGTTCTCCTATGACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTCGGGCTTCCTCAG
R:
CTGAAGTAGTCATAGGAGAACTCCT
Band lengths:
311-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]