HsaINT0108913 @ hg38
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr11:77201448-77202424:+
Coord C1 exon
chr11:77201448-77201638
Coord A exon
chr11:77201639-77202299
Coord C2 exon
chr11:77202300-77202424
Length
661 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CCCTGTCTCTTGGTCCCTAGGCC
3' ss Score
11.57
Exon sequences
Seq C1 exon
CAGGCGAGGAGTCAGGCTTCCTCAGCTTTGCCAAGGGAGACCTCATCATCCTGGACCATGACACGGGCGAGCAGGTCATGAACTCGGGCTGGGCCAACGGCATCAATGAGAGGACCAAGCAGCGTGGGGACTTCCCCACCGACAGTGTGTACGTCATGCCCACTGTCACCATGCCACCGCGGGAGATTGTG
Seq A exon
GTATGTGGCCTGGGGGTGGCAGATGGGTGGGAGGTGCCATTAGACCCCTCTTTGTCCACTTCCCACAGCTGTACAATAGGTTAACGGTCTAGTGCATCTGTGAAGATGATCTTGGGATCTTATGGGACACACATTTAAAGTTGGGGCAGTGCTCAAACCTGTGCCAGGTGGGGAGGGGCCTAGAAATGGCATCAGATGAGGAACTGCCAAGGGGTGGGGCCGGGGGTGGGGATTGGAGAGAGGTGTATCACCCGCACTGTCTGAACAGGCAGTGGGGGCACAGCTGGGAAGGGGGCCCTGCTTCTTCTGGAGCCCCCTTGAGAGCAGCTCTGAGGACTCACAGCCCAGCTTCCCTAGTGGCTCCTGAGCCAGGCTCAGTGGACGAGGCAGCTCTCATACCATGTCCCGCTGCCTTGTCCAGGCTTTCTGACTGACCCAACCTGATCAGACACCTGGGGAAGGGCCCTGAGCTCAGCACAAAGGAGGCAGCAGGGACCTCAGAGACCCCAAGGAGGAACGGGGCTCCCAGGGTCAGAATGGGGCATGGGGTCCATACCCCTGAAGAGTCTCCCAGAGTCCAGAAGGCTTCAGGGTATACCATGTTGATCCTGGTGGCCACAGGTAGAGAGCTGACCTGAGCCCCCTGTCTCTTGGTCCCTAG
Seq C2 exon
GCCCTGGTCACCATGACTCCCGATCAGAGGCAGGACGTTGTCCGGCTCTTGCAGCTGCGAACGGCGGAGCCCGAGGTGCGTGCCAAGCCCTACACGCTGGAGGAGTTTTCCTATGACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474:ENST00000409709:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGAGGAGTCAGGCTTC
R:
GTAGTCATAGGAAAACTCCTCCAGC
Band lengths:
310-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development