MmuINT0104569 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98064113-98064924:-
Coord C1 exon
chr7:98064734-98064924
Coord A exon
chr7:98064238-98064733
Coord C2 exon
chr7:98064113-98064237
Length
496 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CCCCATCTCTTGCCACCCAGGCC
3' ss Score
7.27
Exon sequences
Seq C1 exon
CTGGTGAGGAGTCAGGCTTCCTCAGCTTCGCCAAGGGAGACCTCATCATCCTTGACCATGATACTGGTGAGCAGGTCATGAACTCAGGCTGGGCCAACGGCATCAACGAGAGGACCAAGCAGCGCGGCGACTTCCCCACTGACTGTGTATACGTCATGCCCACTGTCACCTTGCCACCAAGGGAGATTGTG
Seq A exon
GTATGTGACCAGCACCAGGAGTCTCCCCTAGATGCTCCCTTACTCTTCTTCTCACATCCGGTCATTAGAATGAAGGACTGCAACACACTAATGATTGGTATCTTCTGTGTAGATGATAGATAGCCCTGGGGTTTGGGGGGAACCTCAGGCTTAATGTATGGGTATCTTCCAAATTTACATCAGTTGGGGAGAGGCCTGGGGGTCGGGATGGGGAATCATTATCATGTCTGACGGGAAATGGGGCCACAGCTGGGTGAGGGTCTCTTTTGTCATGGCTCACAGCTCAAGGATTCAGTACAGCTCTCCAGGCAGCTCCCGTGCAAGGCTCATGGGACTGGGCTTGAGGCGCAGGAAGTGTAGGCACAGGGAAGAGAGCTTAGGGTCCACACCCGTGAAGAACAAGTCTCCCATCTCATTCTGGAAGGCTCCAGCTTTATCAGATTCCAGTGGCCCCAGCTGAAGAGCTGACGAGTCCTCCCCATCTCTTGCCACCCAG
Seq C2 exon
GCCCTGGTCACTATGACCCCAGACCAGAGGCAGGATGTCGTCCGGCTCCTGCAGCTTCGCACAGCAGAGCCAGAGGTGCGCGCCAAGCCCTACACGCTAGAGGAGTTCTCCTACGACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(84.7=78.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGTCAGGCTTCCTCAG
R:
CTGAAGTAGTCGTAGGAGAACTC
Band lengths:
312-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types