RnoINT0097440 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24754236-24755144:-
Coord C1 exon
chr18:24754963-24755144
Coord A exon
chr18:24754367-24754962
Coord C2 exon
chr18:24754236-24754366
Length
596 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CGTGGGCCTGTCCCCTGCAGAAC
3' ss Score
10.36
Exon sequences
Seq C1 exon
ATGATGTCACCCTTCTGCCCTTCAAGAAAGGGGACTTACTGATCCTGACCAAGAAACAGGGACTGTTGGCCTCAGAGAACTGGGTCCTGGGCCAGAACGACAGAACCGGCAAGACAGGACTGGTGCCCACGGCCTGCCTCTACACCATCCCCTCAGTCACCAAGCCCTCAGCCCAGCTGCTG
Seq A exon
GTATGTCTCCTGCACAGCTCTGATCAGCTCAGCACCGTGAGCAGGGTCTTGGGATACTTAGCCTGAGTCACCCTCTTCCTTGATGAGATCAAAGAGGACAACGTGGGCACTAGGGCAGCTGTACCAATCCCTGTTAACCCTAGAGTGACAGTGAAGTCATAAGTACTCAGTAGGTCCTCAGAGGATTGCTCTCTTCCTCTCACCATGGAAATGTCCTGGGGACAGACACCCTTCCCCTGCCCCAAGAACTGCTCTTTGGGGGAGCCGGGGACAAGCAGGCCCTCTAACATGCACACATTAAGTGCCTACTATGTGCCCTAAGCTTCCACTCAAAGTTGCCATCAGCAGCAGCTCCGGAATGGCTGAGCAGAGATGTCCTAGGAAAAGAGAGCCTTTGGTTGTGAGAACCAGAGCGGCTACACACGGAGAACAGGGTAAGGCAGGTTTACTTGTCCTAATCTGGCTAAAGCAGAGGAAGGTCTCCGACAGTCACACAGTAGGTGTTCTGACTCACTGAGACAGCTAAATCAGGAGAAGCCTAAGGAAGAGCCTTGTGGGCAGCGGCTCCTGATTAACCGTGGGCCTGTCCCCTGCAG
Seq C2 exon
AACTTGCTGGCCATGTCGCCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCAGGCTTCGGAGCCACCGCTAGAGGAGCAGCTCACAGAGTTACCGTACACCCTGGAGGAGTTCTCCTACCAGTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PD(83.9=77.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGTCACCCTTCTGCCCT
R:
AGAACTCCTCCAGGGTGTACG
Band lengths:
297-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]