GgaINT0031670 @ galGal3
Intron Retention
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24969640-24971640:-
Coord C1 exon
chr9:24971470-24971640
Coord A exon
chr9:24969841-24971469
Coord C2 exon
chr9:24969640-24969840
Length
1629 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TGTCTCTGTTCTGCTTGCAGCCC
3' ss Score
11.08
Exon sequences
Seq C1 exon
GGGCGATGTTCGAGGGAGAACTGCAAGTACCTTCACCCGCCGCCGCACTTAAAAACGCAGCTGGAGATCAATGGCCGCAATAACCTGATCCAGCAGAAGAACATGGCCATGCTGGCCCAGCAGATGCAGCTTGCCAATGCCATGATGCCCGGAGCCCCGCTGCAGCCTGTG
Seq A exon
GTATGTGCTTGGGGCCGGGGCAGTGAGTGCTGGAGGGGGGTGGCTGTAGGAGCCCACAGACGTCAGGAACTAATGGGGAAATCCAGTGCTGGGCTGCATGTCTTTGTGCTACTCAATTCCTCCTTGCCCAAAACTACGTTGTTTCACTTGTTAATGTCATTCTCTTTTTTATAACATATTTCTTAATTTTAAGAATGTGAGCGATGTGTGTGTGTGATTTTAGTAGACAGCCATTTCCTTTGCAATTTCATATGCTGTGGGAAATTTTGGGGAAGATTCCTGCTGGCTGTATTCCACTCATGTGGTGGAGCCCTCGGTGCTCTGTGCTGGGCTCCGGTTTGGCCGCATGCTGTGGGGCAGAGCTCAGAGTGTGAGTCGTGCATGGAGCTCAGCCTGCGGCCATGGGGCTGGCAGTGGGGGACAGATGCAGAGAATGCCCTCCTGCACTTGGTGGCCTGTTCGGTTTATTTAATAGAACTGCTATTCTCCCGTAGAGCTTTATGCCTCTCCTGTTTCAAGAAGAAGTGTATGTGGCTGGGAAAATCAGAAATTGCTGTGGAGGGATCTTCACAGTACATTGCCTTTGGTTGCAGTTACCACAGCGTGGGAAGACAGGGCGTCCTCTGTGCTCTTTGAGCATCCTTCAACACAACTGCACGCATCACCAAAGCGAGGGAGCGAGCTGAGGCCGTGCTGCTGTGCGAGCACCAGTGAGGCCACACCGTGCTGCTGCGCAGGCGTTCACTCCACAGCTGCCTCCCCATAAGTTTTTAACTGCAAAGTATGCCCCAGTTTTGTTTTTCTTTCCTGACTGGAGTACGGTGATGCTGCACTGGTGCCAGCGCGCTCTTACTAGGGGCTATGGAGAAACTGAACAGTCTGCATGCAGCAGGCGGTGAAAGCCATTGCTTAAAATAGTCTTCTCTTATCATCCTACTAATAGGTCCATTGTTGCATAGACGATAACACAGTAATGAAAAGTATGGTTAATTAATAGCAAACTTAATATTATTTTGTTTCTTGTAAAATTTATGGTTTTCTGTCTCGTTCACGTGGATGAAAAAGCAGATACATCGAAGAGAGCCCTCTTGTTTATGCAAATATCAGGCTTTCTTTCTCCAGTAACCTTTGCATATGTTTTTGTGCAGTGTTTCAGACAGACTTTCTCGTTGCTTGCAAACAATTGGGTCATTTCCTCAGGAACTCAAAGCCATGTGGTGCTCTGTGCTGGCTGGCCTACATAGATAGGAAACAGAGAAAAAAGTTGCATTGACTCCATTGTTTTTCCTTCTAAAAATTTCTTTGGAAGAAAAATGGAAACACCTTGAGCAACTGCTTTATTTGGACATGGAGACAAAGAGCTGGACATGGACACCGACTGGCCGTGCCAGCGCCGTGCCCTGCACTCAGTGGGGCAGCAGGTCCCGATCCTCGCTGCAGCGCTTGATCCTGCAGCTTGCTGCCGCGTGCCGCAGCCCTCGTGCCAGTCCTTTCTCACCAGCACCAGACACCTGCACGCGCTTTGGCTGCATTCCTCCAAGACCCACGGACCAGTCCTGTGCCCACGAGCGCCGAGTGGCAGCGTGGCAGGTGCCCGTACTTACGCGTGTGTCTCTGTTCTGCTTGCAG
Seq C2 exon
CCCATGTTCTCCGTTGCGCCCAGCCTAGCCACCAATGCCTCGGCTGCCTTCAACCCCTACCTGGGGCCCGTGTCCCCAGGGCTGGTGCCGGCGGAGATCCTGCCCACCGCGCCCATGCTGGTGGCGGGCAACCCTGGTGTCCCGGTGCCTGCTGCCGCCGCTGCTGCTGCGCAGAAGCTGATGAGGACGGACAGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016870:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.649 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAAGTACCTTCACCCG
R:
TGTCCGTCCTCATCAGCTTCT
Band lengths:
346-1975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]