MmuINT0096295 @ mm10
Intron Retention
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60595594-60603894:+
Coord C1 exon
chr3:60595594-60595764
Coord A exon
chr3:60595765-60603693
Coord C2 exon
chr3:60603694-60603894
Length
7929 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CTTTTTGTTTCAATTTGCAGCCA
3' ss Score
9.85
Exon sequences
Seq C1 exon
GGTCGTTGCTCCAGAGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTAGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAATGCCATGATGCCCGGTGCCCCGTTGCAGCCCGTG
Seq A exon
GTGAGCACACTTTCCACCCCATCCCTGTCTGTGTGGCCGTGTTCTGTGTCTGTCCTGAAACAGTGATTGTATGCAAATAGAGGCAGCAGTGGTAATTGCTGAGTGCCACGCCCCGTGAGGTTACTTACCTTCACGGCAAACTTGGCAATTTATAGTCTAGTATTGCTTCTGCTAAAATTCTCTTAAAAGTTAACCGTTTAACCTGCGACTGTTCACCTGGTGTTTATTAAAGTAGCCATTAAACTCAGTTTAGTTAAAATACATTCCAAATTTCCTTTGAAGTTGATAATGATATTTTTCTTAAAAACAAAACAAGAAAGCAGATAAATGATAAATAGTAGTCTTTAGCTTTGAGGCTATTTCTTGCTTTCTTCTCTCCTTGAAGAGAATCCCTGTTATTTTTTTTCTCTCTCAAAAAGGAGACTTTGTGGAAAACTTAACTTGAAATTACTTCATAGTCACAAATGCTGGGCACTTTTTCACAGTGGCGAGTTATAAGCATAGCTTGGAAGTATCATCAGAAGAGAACTAGTCTAAACACCAGAATCCCAAGGGCCTTTGAAAAATAGCTATGAGTGGTCATAGGTACTAATATTTTCCTAGCCATGTGTGTTGGTAACTTGTTTATGAATAAACATATGTATTTAAATGTTTAGATTTTTGATGTGCATGTGATAAATTACTTTAATAATCTTATTTATATAATAGTTAATGTTTGGTTAAAATGGTGTTTATGTTAATTATTGTTCAAAAACCCTAAATTACTTACATATGTGATAACATTTATATGATCAGAATATGTCTGATTGATTTATCGCTAACATATTATGAACTATTATAAGGTCATGAGAACACATGTTTTTCCAGTTTGTTAATTGTAGCATGTGTGCTAACTGATTTTTTTCCTAATACATTTTAACACCTGAACTCAATGTAATTATTATTCTCTCTTAGAACATAATGCAACAATCATTCCAAAAAAGAGGGGGGGATTGCATTTCGAGGTGGGAGGGATCCCCATATTACACCGGCAGTGATACCATTTATCAATACTGTACAGTCGAGGTGAGAGAATATTATAATTAATTCTCTATCATTTTAATATGATTTTTATTTTATGACATTATTGGGGGCTCAGTTAAAATGTGATATTTTGATTTTTATGGCATCTCCTTATTTTATGTGTCTTTATGATGATAACATAAATATTTTCATTTGGTTAAGAATGTTTTGTATAATCATAATTTCTTACAGACAAATCGGTTCTAAACATATCTCTTACACTTGGCCCTCATGTATGGTTTCAAAGATCTGGAACAGTTTCTACTTTAGTCAGCCTCCTTGATGTGAGGTCCTTTCTCCCACTTAAGCCTGTAAATCACACTTACTGACATTCTGTGCTTTCTGTGACTCAGAGCACGTCTGAGTCAGGCAAGTGTAGATCTGGGCTGGAGGAGCATAGTCCCCAACACGGCCCTGAGAAGTTAGTTTTCTGTGAAGTCTTGGCCCATTTTTTGACCTTGTCCTTAAATCTCCTCGCATGGGTGATCCAAGGTCATATTATGCTTAGCCCTGGAACAAACTGTCAAAGATCTTTTATTCTCTTTGAAATTCTAGTGACATATGTGTTTTTTGTAGTCACTAAATCATAGATCTCTGAAGCCATCCGTACTTAGACTCCTGGTCCTTCTGTTAACATTTTTCTGCATAGACGAAGTAATTATCTGTTTTAGTTATGAGCACAGGCGTTAAGTTCATTTCTCCTTCACATCATTACAGTTCAATGGGAATTACCCTCTACAAAGGTACTGTGAAACCACAGTTGAAAAGTCTCCGTTCAGGATGATGTTTTTGTAATAAGTATTAAAATCACTTCAATTATTCAAACCTGAAGCATTTTTTACTGTGACGACTGTAGAGAAGGCTTTAATCTAGGAAATTTGCCTTCAAAACCCACCCGAGACTCTGATCCTCTTTTGAGTCAGCCTGGTTTCCATGAGGATAACACAGGGATCCAGAAGTAAATGGAATGACTGTGACTAGCTGCTTTCTGTGACTTCAATTTGAGCTGCTAGTAGAAAATAGAGCCACAAGCTGCCCTGTCACTAACGTTGAGAAGGACTCGGCCATGGGAGAGCATGGACATAGATCAGGCAGGAGTAGTGTGAGTGTGGCTTTCGGTAAGCAGATCCACAATATCAGAGCCTAGGAGGACAAAGATTTCAATTTAGCACCAAACTTCATACAGAGGACAGAGGTAGCGAAATGAGAGCAAACTAAATTTATACACATCCAGTAGTGTGTACCTGCATATGGGAGAGGTTCATAACTGACAGACAGAAAAAGAAGGAAATAAGGAGTTTCCCAGACAGCCATCAACCTGACAGATATTCATAGTGGTTTCTCTGCCCTGAAGGTGAGAGGAATTATAACTCAGAGCCAGGGCACAAGCCAGAAGTGGCAGCTTCATTGCCACTACAGTGGGCTACAGTGATCAGCAGTTGTCAGCAGTGTTTCCAAGACAAGTGAGATGATTGTTAAGAGCAGCCACTGTCCCACCAGAGCATGGTATGGGGGTAACTTGGTTAATGCAGAGATTCATAGGAGAACTTTGTGCCTTCAGTAGGTTGTCATGCAGTATACCCATTAAAAAGGAGTAACATTTTTGAGACAAGTATAACAGTTTGAGGCATCTGTTGTACTCAGCAGGTTCTGTATATGCCATTCTCACAACTTTGCTGCGAGCTAGGTAATATAATGTCCAGTTTAGGGATTGAGCCCAAGAGGTTCAGAGAGGTTAACTACATGGCTTAGGTTACACCGCTTGTTTTAATCCAGCCTGGCCAGATGTTGAGCTTATATGGTAAAAACATACGGTGAACAGGCTAACTACTTTGGATCTATGGCTGACTCTTTGATCTTCAACATGGAAATAAAATATGAAATATATTGTCCAGAATGTCTTTGTAATTATATAAACATAATTCCCATTTCACAAGATTAGTATAAAGGGAGTTGGATATAAGAAATGGAACTTCTTTGTGTGTCTAATTCATGAAAGTTCACACAATAAACTGTAGAATTTTTTATATCAACTCTTTTTGGCATTAGGATTTGTAATAAAAATATAAGTGAATATTTTTATGTTTTTTATCATATATGACCTTTGAGGATAAGTGAGATTGTAATGATTAGTCTTCAGAATTAAAGAAAACTTTCTGTGCTCTTTCATACGTTCATCATGACAATGAGAAATTGACATACACTAGCTCACCCTGACCTGCATCTGCTGGATGACAACCTGGAAGCTTCTGTGTATTTCTTTCATCCCCAGGATGATGTTCCTTAGACTCTCTGATCCTCCAAGCTCTCTGCATCACACATAGATCTGTGTGGTCAGTGGGGACTGAGAACTCGGTGTGAGCTCAGGCGTTCCATTAGTGAGCCCTACCAGGCTTTACGTGGGACCTGGGTTAGCAGTGACTCTACAGAGTTGCTGGAGCAGCTACTCCTCAGGTACACACCAGCACCTTGAGACATGCAACCTGTGTAGAAATCCCAGGCACTTCATGAATCTGATGTGTGTGTATGAGCAGTTCAGAGGCCTTAGATTCAGTTCAAGTCTCAAGAGTGGCTTTGTCACCTTGACGTTGGCAGTCTTTCATATTCCCAGGGTTCTTTGGCAGTAGGTGAAGAAGGCTTTGAAGTTATTATTTGTCCGACTCCCAGACTACCTAGAACTTGCCAGTACTTTCTGTGCTTTCTTGTCTTGTTACCCACCTCATGACGTTATGGCCAGTTCATTCTATAGAGTCCCCAGAAAACTATTTCTACATCAGCCACAGTGACTTGTCATCTGTTTTGCCATGCATCAGTCAGTCTGACTTTTCAGGTTTGTGATCAGTCCCTGAACTGTAAGAATAGACCTGTGCTCATTTATACTGAGAAGGTCTTAAATGAGACTTCACTATTTAAATGTTTGTTTCAATAAAACTGGGTCAAAGGATACAGTGAATCAGGGTAAAGAATGAATTCCTTCCCCTTCCCATTCACAAGCTATGAGTAGAGTCCACAGCAGCCAAATGCTTCATTCTTAGACAAAATTGAATATGGGTTTATTCATAATACCTGTTAGCTCTGAGTGCTGTTCTAAACAGTAATTCACTAAAACTAGTTCTGTATCTGTTTACAACATGGTGCTTGCCTAGAAACAGTTGCCCATACTTGGGATGTCCTACGGATTTAAAAGAGCTTGGCATTTCACTGTTTACAAGTTTGACTGAAGCATACATGTATATACATATGCAAACATTCTACTAAGCATGCATGTGTACACATGCACATTCTACCAAGCACACACATGTGCACAGTTTACTAAGCATACATATGTACACATACTACTGAACATATATATACATGTGCACATTCTAAGTGTATGTCTCTCTCTATATATGCACATTCTATTAAATATACATGTGTACATATGTGCACATTCAACTAAGCATACACATGTATACATGCACATATTCTGCTGAACATACACATGTATACATACTCACATTCTATGAAGCATATATACGAACACATGCACACACCCTAGGAAAAACTGACTTATAAAATTTCTGTTCCATAAATTTCTAAATGATAAGTTTTGGATCATTATATATGACCCTTCTTTTTTTTATAAAAACATACTATTTTCAGCATTTTAAAATAAACAGCCTTGTGATATTTGCAGTGTTCAGAATAATAGTTATAATACTTAAGATGTAATGTTAATATAAAAATTAGAAAAAATAAACTTTGAAATATTCATTATAAAGTAACAGCTAAATTCTGAGGTGGAAAAAGGATATATAATTAAATCTACCATCTAGATATCTGTGCTAGAAAATATATAAAGCATTTGCTACTCTTGCTGGCAAAGAAAAATCAGCTAGCAAATCTGCAGTGAATATGTTATGCAGTAACTGCAGAGGTGGTTACAGTGCCATGTGCCGGGAAGTAGGAGCAGAGGAAACAAGAATGGCTTCAGGGTCAGTGCTACATGCAATGCGGGTGAGCTTTATGAGACAGAGTGTAGTGGTGTGGTTCCCTGGGAAGCGTCGAGAAGTTCTGTTTCCTGAAGCGTACCTAGGAGTCAGACAGGTAGGCTGAGGGCAGGCAATGTGGACAGAAACTCATAAATACTCATAAAAAGAGAACCACTAAGAAACCACTTAGAAACCTTCTGTCCAATCGGAAAGAAATCTATTTCCTTAAATACATGGAAATGGAATCACCCTGAAGCTTTCAAAAATACTGCCGCCTAGATACCTTTCCTGGGAATTCAGACAAGGAGGGGTCGAACTATAACATGATAAAACTCCTCTAGGGAATTTTAAATTCACATTTGGTGATTATGTGAGAAACAGACTTCCAACCAGACTAGAAGCAGACTCAAATGTGCCCAATCCAGGACCTTCCGTTGATTCATTTATAGTGGTAGACATGTAACATTCGTGAGCATCTTCTTTAGAAAATAAACATAATAATCCCCAACAAAGTGGCAGCTCATTCACTGAATGCCTACTGTAACCAGGCATTGCTTTGTATGGTGGGAACCTAGAAGGGAACTAAGAGATATCTTCTACTCTCCTGACATCCCCCCTCCCAAAGAGGCCAAAGAAAGGAAAGTCTTATAGTAAAAAAATTAAACATAACATAAGTAAAGCACTTATCACAGTGTGGGCTGCCCGGGATAGGGAATTACTAGTAATAATCATGTTTGTGTAGTTAACTAGGATGGTAATGTGAAATTGAATAATATTTTCAGTTATAATGAAGCCTAATAACTGTAATGTAAGCAGAATGCTTCATTTAAAGCAAACAAGTGATAAATAAACTGCCCCAGAATTAGCAACTGGAAAATGTCCTTGGAAAGGTAATGCTAAACCAACCTTCATTGGAACAAAGATATCTATAAGTCACTGCTGCAAGGATGCACTCAGTATCAAATATACCAGCTACATAGTTAGACATTATTCAATCCCTACTTCAGAGAAACGAAGACTTCAAATACCAATGCAGCCATTCCTATCTTTGAGATCTTACGAGCCCTCTGCAGGTCAGCTCCGGTAATGCAGGAGTGGCCATGGTCACTGGCTTTCCTACATTAGGATCCACTCTGAGCTGTAACCCACCCCTAACACAGTGTTCATAATTGGTGACAGCTACATTCTATCCATATGTAGGTTTTCACTGTATTTAACTTGGTGAGATTTAACGAGGCTGATTTTATTGGTGTGCTGTCATTATTGTGTCAAGTCAGGGAAAAATTTCTTCATCCTGAATGTCTTTATGAAGGCATTTGCCTTAAGTAATTCCTATAGTATACAGTGACATAAACATTTCAGTAGCTTGCTATAGTAAGTATCAAGTGGGCTTTCTTGGAACTCATTTTAATTTACAGCTATGAATGCAAAGAGAAAGGATATTAATTAGCTTTCAATCTTTTAGGACTCTGCTAAATTTATAACAATTCTTCTATGTGGTCTGAGATTCCATACCCTGTATCTGACTGTGTGCAACAGAACACACATTTGCCTAGAATGTTCTTGGACAGAAGTTTAATGCATGATCACCATGCAGGACTGACCCTGTCATGGTGCTGCCCTGGCCTCTAGCACACAAAGGGAAAGCCTGAAGTTAGCTGCTGTTCAGGGTTTTGTGGAGAGACAAATGCCACTGGACCCAGTTTTACACATGGATCCTTCTTCATAATACACATGGAATTTTTGTATTTCCTGAGGGCAGCTGCTTCGCATTGGAATAGGCTTGAGGTTTGAAATGGAAAGACTTATTCTAGGCTACTTCATTAGTCAAGGGCCACAGACCTGTCAGAGTAATTAAACATGGTGTTCAAAGCACATGCTTGGAGGACTAGCTATGTTAGGGTGAATGTATCAGTGTGAGCTATGCTATGTTATAAATTTTTCCCAGTGAATCAATGTATACATTAAATAGTCTATCGTTCATATTGTTCTTAGTACAGATGTGTACACAATGCAGAGCTGTCATGTAGGATGGATGCTCAACCATGGTATAGTCCTTTGGGACCTTATGCTCTCATATTAAAGAATGCCATTTACACATAGTAGATCCCTGGCTTCTCTCCATTGAATGCAGTAGCATCACCCCAGTGTGTCCTGCCCGCTGACAGCCCATCCCATGTTTTTTAATAATTCTGTGGCATTTCCTGGGAAATGTTCTGTCAGGCTTCACATTCCAGACATTTTCTGGAGAAGGTTAATTTCCATTGCTGAGTGCCCCACAAGTATGGGATGGGCTTGTAGAACACTGAACCTTTCTTCTGAGAAACCGACATCAAGTGACCAGGCCAAATGCTATCTCTTCTGTGCTCAAAAGACAGTGTAATCATCACCTCTCACAGCCCACAGATTTGGTCAATGTGCTGGCTGTGGGGCTCTGTGATCCCCTGGGACATCTGTGTCTGCTCAGATGATAGGCACTTATATCCTGTTAACACTTGAGAACAGACCTTTCCACTATATCTGACAGCAGTTACACAGTGTGTTTCTCAGACACATTTCTAGGATTGAGTCACAAAGGTGGAGACTGGGTGAGCACAAACAAGTGTCTGTACTAAGATATTTAAGACGTTAAACCACAAGTATTCTAGATGCCAATCTTCGAACCCCCTCTGGAGATATGAATGCATATTCTGCCTGCTAGATTTGGAGAAAAACAATGACTTAGCAAATATCAGTATACTGAAATCTTCTTAGACTAAATTAAAGACAGAATTAAATAGAAGTTAAGGAAGAAAGAATGAATGATAGATGAAGAATAAATGATAACTCTGTAAGTAGAGTATCAATTTGGAATGGAGACTTGCCATTAAGTTTTGCTTTTTGTTTCAATTTGCAG
Seq C2 exon
CCAATGTTTTCAGTTGCACCAAGCTTAGCCACCAGTGCATCAGCAGCCTTTAACCCTTACCTGGGGCCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTGCCGACTGCACCAATGTTGGTCACGGGGAATCCTGGAGTTCCAGTGCCAGCAGCTGCCGCAGCTGCTGCACAGAAGTTAATGCGGACAGACAGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763:ENSMUST00000099087:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.285 A=NA C2=0.771
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(7.7=3.5)
A:
NA
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types