GgaINT0031673 @ galGal3
Intron Retention
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24956679-24961177:-
Coord C1 exon
chr9:24961024-24961177
Coord A exon
chr9:24956774-24961023
Coord C2 exon
chr9:24956679-24956773
Length
4250 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TATGATTTTCCTTCCGAAAGTTC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCGCTTGAAAAAACCAATGGTGCCACCGCAGTGTTCAATACTGGTATTTTCCAATACCAGCAAGCTCTTGCCAACATGCAGCTGCAGCAGCACACAGCCTTTCTCCCACCAG
Seq A exon
GTAAGTGCTGCCGCGTGCCTGGCGGGGTGGGAGGGCGGGAGCCGTGGGGCAGCACCAGGCGCCGTGCGGTGCCGCAGTGCGGTGCGGCCGTGCCGAGCGGAGGACGCTGGTGGAGGCTGCTTCCCTCCCGGTGCTTTCGGAGGCTGGGTGGGTGTTTTCATCTCTAACATAAAGATCAGCACTGTGCTCTGTCCTCCCAAATCAAAACTGGAAATCTTTCCTCTCGTTCCGCTTTCTCATTAACTTTTCTTTATGACACATCTCTTCAGCTCCTGTGTTTGTTTCTGTTTGCTGTGAGACCCCTTAGCCTTCCTGTGCTTAGAGGGAGGTGTGAGTCAAAACTGGAGGGTGTTGTTTGAGTTTTGGTGCAGTGGTCATAAGGCCCAGCCAGGCAGCCTTGCAGATAGCCAACCGTGAGCACACGCAGACAGTCAGGATCCACACCTCTGCTGCCAGAGCTTCGGGGCTGAGTAGCAGAAGTGAGGTGCACTTGGTTTTAGTCCAGCACAACCACAGTTACGCTCGTCCTAGTGCAGCTGCTGAAGCATTGATGTCTGTGCTACACACATAAGCAGAAATCCCTTTGAAGTAAACAAGACATAAAGCTTGAATATAGCTGTGGTTCTGCAAACAGCACTTCATGCAGAAGCATATTTTAGCCCTCCCTGTGAGCTTCTGCCTGTATTAACGCAGGCGAGTCAGGTTTTTCCACATGAACCCCACGTTAGAGCACCATTGTCAGTCTAGGAGGTAAGTGATGGAAAGCTGGGGTCATCTGACAGATAGGTACTCAAAACTGGAAGGAGCCTGAGGACAGCCCTTTGTAACTCAGGCTAGCTGAGGGAGGGGAGAAAGGAGAATGCAACTACTGAGTCTTTACCCAAACATTTTCAGCATGTGCATTCCTGGGAATTTGGTGCAATGCCTTTTACCATTCTGTCCTGATGGTAGAATTTTGGCATATAGTGATTTATATGGCACAAAAATTATTTGTTTGATGTAGTGGATGGTAATAACTTACTTGGATTCCAAAAACGTGTTGCAACCACTAGTGTGTATTAGCAGGAGCTTCGTGGGGTCAATGGAAAGGCTTTGACTAAGCAGACATTAGGCCAGGTCTCTAGACCATGTTCTAAAATATGGACCAAATGCATAAGCAAACACAGCCAATCCTGCTGGTATTGAACAATTTCACAAGTTTGTTTTGTAAAGAGTGGCTGGTGTAGTTATCTGCAGAGGTTTCCCACTTCCATTAAATCAAGGGGGGTTGGCTGGTTTCTGGAAGTACTCAAACTGCTCTCAATCGTGCCCTTTAAACTTAGAAACTCAGGTTGTAGTTTGTGTACACCAGACCTCATTGGCACAGCTACCTTCTTACTTTCTAACCTGCTGTGGAACCTGTAGGAGCTTGCAGAGCAGTTCTTGGTGCTTCACTTGAACTGTCTTGGCCACTCGAGTGTAGTGGATGCCCAACAAGAGGATTAAGGTCAGGGCAGTGAGGTACCGTTGATGCCAGAACACCCCCAGGGGAGGCGTTGTCACAGGGCCTGCTCTCTGAGGGCTTGCTGTCACAAGGCCTGCCCTCTGGGCTGCTGGAGCTCCCCAGCCCAGCCAATGGCTCGAGGCATTGCAGCACGGAGGGGAGTACCGATGGCGCTGTCTCTCCTAGGTGAGCTGAGCTGAGCTGAGCTGGCTGTATGGCCGATCCTGGCCTGTGCATGCCCACTGCACACAGGAGGGCTCCTAGAGTAGAAATCCCAGCAGGGAGGCACCTTTGTGTGGGCTGCTGCCAGGGGCTCAGCCGCTGCACTGCTGCTGCTCTATGGGAGCTGCTGGGCACCGCTCTGTGGGGCTCCCAGGGGATGTGGAAGCGCAGAGTTCCATGCGAGGGAGGAAAGCGCCGGGTGTCTGCAGTCACTCTGCTGGACAGGTGTGCTGCTGCTGTGAGGGGACACGTCCCGTTGGGATTTTCCAGACTGGACTGAGTATAATAGGCTGAAAGAAACAACGTGAAGGGGAGAAGAGAAGAAACTGCTTAAGCCACAGGTGAACGTAGAATATGCATCAAGTTAGCACGATTCCTCTGCTGAAATGGTCGGGAAGTGAGGCGGCCGTCAGTTACTGGCACATCCTTGCATTAACGCTCTGCCTTGTGCTGAGCAGCTCGGGAATGTCTGCGACTGGGCATCTATTATTCATGTGTTCTCATTAGTCAGAGCTTCTGAAGTTGAGATGAATATTAAGGTCACAGCAAAAATGGTTTTTATTGCTGGTAAGAGGGCCATACAGCATTGTGTCTTCATATTTGCACATCACTGCACCCTAGTTAGGATTTTCGTCTCTGCCTTAAGTTCATCTGCTGCGATTCATCCAGAACTTTGTGCACTGGTTATAATGCTAATGATGATAACTCAGACTGCAATTTTAAGCTGAAAAGCTTCACAGGGACATTGCAGAGAGTCATTACAAAAATCTAACCTGTTTTTAGCATGTAGGCCTAATTATGCATGGAATGATCTAATGTTCCAGATATAATGAAGCGTGCACTAACTTATAAATAGGGCTCTTCTTTGGAGAGGCACGACTCAGGTTCTTCTGTAAATCCCTATTAACACCCGGGTGTCAGAAACATGACTGAGAAAACAGTTCTACTCATGTTTGTACTTCATGGCCAAATGTTGTTCCATTCTTTAATCTCATAAGTGGTCCCACTGACGTCAGCAGTGGTTCACAGAGGGGGAAGTCAGGAAAGATACCCTTCTTTTAACCTTTCTTTGTGAGTATTTTTCATCTTTTCCATTACACAGAAATAGATCAGTAATGAGGAAACAGAGTTATTCCCTTTTCTTTGTAGCCCTACAGACGCAGCGATGGCAGGGAATCACCTCGTCCCTGCCACTAGTGCTGTTGTCTGACTCTTTTCCTGCTTACTTAAATGCTTCTGAAGCCGTGTGTGCCCCAGTACAACACTGGGTCCTTTGCAGAGCAGTGCCCTGCGCCCACAGCTCTGTGGAACACCAGAGCAGCACCGCACCACCGACAGCTGGCTCACGGACCTGCGCTACTGGGGGCAGGTGCAATTGCAGATGAATCTTTGCTGTATCTGAGGAAATCCAGTTGGAGAGCAGTGCAACACTTGTGTCGACAGGCAGAGAGATGTAGGACAGCAGTGAGGTTCCGCTGCAGGGCGCCCTCGTAGCGGTGCTGGTGCTCCAGTCGCGGAGGCGAGCACAGCCAGCTCAGCCCCACACCTAGCTCAGCCCCATTCCCCAGCTTAGCCCCAGCCCCCAGTTCAGCCCCACACCCGGCTCAGCCCGCTTCTCCCTTTCTGAAGGCCAGTTCTGATGGATCACTGTGCTGTGTGTGGTTTGATTGTGCTGACGGTTATGTGCCACTGTTCCCATAATAACAATTTTTCTTCTTTGTTCAAATGAAATTTTCTAATGACACGTGTGATGGGTTGTTTTAATTCTTTTCCCTTTCCAAATCCACCTTCCTGTTGCAATGCATGATGGGCAGGCTCAATATTGTGCATGACACCCGCTACAAGTGTTGGTAGGTGCCAGCTTTGTTTCTTGATTATCTTAAACCTGTGGTGCAGCTCACGGACCCTCAAAATCCACTGCTAGATTGTAACTTGTAGCTCCTGTGCCAATCCATCCCCTCAGCCTCCCGCACTAACACCTGTCAATTAAATGCAGTCGTTTTATTTAATTGACACAGACACGTAGATGTTGTCAGTCCCGTATAGCACTTGTTTGAATTGCACATCGTTCCTTGGTGGATTTTGATTGGACTATGAGTTCCAGTGTTTAGAAACTATCTCGTTTTAAATAAAGACTGTGTCTTGCTATAGTGACGTAGAAGTATACTGTCCTTCAACAAGATTAATTTCTGTTTTTAGTAAATATTTGGGTTGCAATTTTTAAAGACAAAAACCTGTAAGTGTAAGGGCGTGTTAAAATTATTCTGTTGCTTTTTGTACTGAAATGATGAAGCTTGTTTGTGTCGATTTCTCAATTTGATGGTAACAAGCATTTCCCCTTTTTTTCTCTTTCATTTCCCTCCCCTCTCTCTCCCCGGCATGTTGTCCTGCTTTGCACTGTGGTTGCATGTCACGCGCTGCCAATGACGTCTCGGGCTTTTTGCTGTGATAAATACCATGCTCAATGATCCTACCACATGTCGCTCTGGTTCCCATACTGCTACACTCTTCTGTATGTTTGCTTATATGATTTTCCTTCCGAAAG
Seq C2 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCTGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016870:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.375 A=NA C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]