Special

GgaINT0031673 @ galGal4

Intron Retention

Gene
Description
Muscleblind-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKW9]
Coordinates
chr9:22852750-22856458:-
Coord C1 exon
chr9:22856305-22856458
Coord A exon
chr9:22852786-22856304
Coord C2 exon
chr9:22852750-22852785
Length
3519 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTGCAATGCATGATGGGCAGGCT
3' ss Score
0.74
Exon sequences
Seq C1 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCGCTTGAAAAAACCAATGGTGCCACCGCAGTGTTCAATACTGGTATTTTCCAATACCAGCAAGCTCTTGCCAACATGCAGCTGCAGCAGCACACAGCCTTTCTCCCACCAG
Seq A exon
GTAAGTGCTGCCGCGTGCCTGGCGGGGTGGGAGGGCGGGAGCCGTGGGGCAGCACCAGGCGCCGTGCGGTGCCGCAGTGCGGTGCGGCCGTGCCGAGCGGAGGACGCTGGTGGAGGCTGCTTCCCTCCCGGTGCTTTCGGAGGCTGGGTGGGTGTTTTCATCTCTAACATAAAGATCAGCACTGTGCTCTGTCCTCCCAAATCAGAACTGGAAATCTTTCCTCTCGTTCCGCTTTCTCATTAACTTTTCTTTATGACACATCTCTTCAGCTCCTGTGTTTGTTTCTGTTTGCTGTGAGACCCCTTAGCCTTCCTGTGCTTAGAGGGAGGTGTGAGTCAAAACTGGAGGGTGTTGTTTGAGTTTTGGTGCAGTGGTCATAAGGCCCAGCCAGGCAGCCTTGCAGATAGCCAACCGTGAGCACACGCAGACAGTCAGGATCCACACCTCTGCTGCCAGAGCTTCGGGGCTGAGTAGCAGAAGTGAGGTGCACTTGGTTTTAGTCCAGCACAACCACAGTTACGCTCGTCCTAGTGCAGCTGCTGAAGCATTGATGTCTGTGCTACACACATAAGCAGAAATCCCTTTGAAGTAAACAAGACATAAAGCTTGAATATAGCTGTGGTTCTGCAAACAGCACTTCATGCAGAAGCATATTTTAGCCCTCCCTGTGAGCTTCTGCCTGTATTAACGCAGGCGAGTCAGGTTTTTCCACATGAACCCCACGTTAGAGCACCATTGTCAGTCTAGGAGGTAAGTGATGGAAAGCTGGGGTCATCTGACAGATAGGTACTCAAAACTGGAAGGAGCCTGAGGACAGCCCTTTGTAACTCAGGCTAGCTGAGGGAGGGGAGAAAGGAGAATGCAACTACTGAGTCTTTACCCAAACATTTTCAGCATGTGCATTCCTGGGAATTTGGTGCAATGCCTTTTACCATTCTGTCCTGATGGTAGAATTTTGGCATATAGTGATTTATATGGCACAAAAATTATTTGTTTGATGTAGTGGATGGTAATAACTTACTTGGATTCCAAAAACGTGTTGCAACCACTAGTGTGTATTAGCAGGAGCTTCGTGGGGTCAATGGAAAGGCTTTGACTAAGCAGACATTAGGCCAGGTCTCTAGACCATGTTCTAAAATATGGACCAAATGCATAAGCAAACACAGCCAATCCTGCTGGTATTGAACAATTTCACAAGTTTGTTTTGTAAAGAGTGGCTGGTGTAGTTATCTGCAGAGGTTTCCCACTTCCATTAAATCAAGGGGGGTTGGCTGGTTTCTGGAAGTACTCAAACTGCTCTCAATCGTGCCCTTTAAACTTAGAAACTCAGGTTGTAGTTTGTGTACACCAGACCTCATTGGCACAGCTACCTTCTTACTTTCTAACCTGCTGTGGAACCTGTAGGAGCTTGCAGAGCAGTTCTTGGTGCTTCACTTGAACTGTCTTGGCCACTCGAGTGTAGTGGATGCCCAACAAGAGGATTAAGGTCAGGGCAGTGAGGTACCGTTGATGCCAGAACACCCCCAGGGGAGGCGTTGTCACAGGGCCTGCTCTCTGAGGGCTTGCTGTCACAAGGCCTGCCCTCTGGGCTGCTGGAGCTCCCCAGCCCAGCCAATGGCTCGAGGCATTGCAGCACGGAGGGGAGTACCGATGGCGCTGTCTCTCCTAGGTGAGCTGAGCTGAGCTGAGCTGGCTGTATGGCCGATCCTGGCCTGTGCATGCCCACTGCACACAGGAGGGCTCCTAGAGTAGAAATCCCAGCAGGGAGGCACCTTTGTGTGGGCTGCTGCCAGGGGCTCAGCCGCTGCACTGCTGCTGCTCTATGGGAGCTGCTGGGCACCGCTCTGTGGGGCTCCCAGGGGATGTGGAAGCGCAGAGTTCCATGCGAGGGAGGAAAGCGCCGGGTGTCTGCAGTCACTCTGCTGGACAGGTGTGCTGCTGCTGTGAGGGGACACGTCCCGTTGGGATTTTCCAGACTGGACTGAGTATAATAGGCTGAAAGAAACAACGTGAAGGGGAGAAGAGAAGAAACTGCTTAAGCCACAGGTGAACGTAGAATATGCATCAAGTTAGCACGATTCCTCTGCTGAAATGGTCGGGAAGTGAGGCGGCCGTCAGTTACTGGCACATCCTTGCATTAACGCTCTGCCTTGTGCTGAGCAGCTCGGGAATGTCTGCGACTGGGCATCTATTATTCATGTGTTCTCATTAGTCAGAGCTTCTGAAGTTGAGATGAATATTAAGGTCACAGCAAAAATGGTTTTTATTGCTGGTAAGAGGGCCATACAGCATTGTGTCTTCATATTTGCACATCACTGCACCCTAGTTAGGATTTTCGTCTCTGCCTTAAGTTCATCTGCTGCGATTCATCCAGAACTTTGTGCACTGGTTATAATGCTAATGATGATAACTCAGACTGCAATTTTAAGCTGAAAAGCTTCACAGGGACATTGCAGAGAGTCATTACAAAAATCTAACCTGTTTTTAGCATGTAGGCCTAATTATGCATGGAATGATCTAATGTTCCAGATATAATGAAGCGTGCACTAACTTATAAATAGGGCTCTTCTTTGGAGAGGCACGACTCAGGTTCTTCTGTAAATCCCTATTAACACCCGGGTGTCAGAAACATGACTGAGAAAACAGTTCTACTCATGTTTGTACTTCATGGCCAAATGTTGTTCCATTCTTTAATCTCATAAGTGGTCCCACTGACGTCAGCAGTGGTTCACAGAGGGGGAAGTCAGGAAAGATACCCTTCTTTTAACCTTTCTTTGTGAGTATTTTTCATCTTTTCCATTACACAGAAATAGATCAGTAATGAGGAAACAGAGTTATTCCCTTTTCTTTGTAGCCCTACAGACGCAGCGATGGCAGGGAATCACCTCGTCCCTGCCACTAGTGCTGTTGTCTGACTCTTTTCCTGCTTACTTAAATGCTTCTGAAGCCGTGTGTGCCCCAGTACAACACTGGGTCCTTTGCAGAGCAGTGCCCTGCGCCCACAGCTCTGTGGAACACCAGAGCAGCACCGCACCACCGACAGCTGGCTCACGGACCTGCGCTACTGGGGGCAGGTGCAATTGCAGATGAATCTTTGCTGTATCTGAGGAAATCCAGTTGGAGAGCAGTGCAACACTTGTGTCGACAGGCAGAGAGATGTAGGACAGCAGTGAGGTTCCGCTGCAGGGCGCCCTCGTAGCGGTGCTGGTGCTCCAGTCGCGGAGGCGAGCACAGCCAGCTCAGCCCCACACCTAGCTCAGCCCCATTCCCCAGCTTAGCCCCAGCCCCCAGTTCAGCCCCACACCCGGCTCAGCCCGCTTCTCCCTTTCTGAAGGCCAGTTCTGATGGATCACTGTGCTGTGTGTGGTTTGATTGTGCTGACGGTTATGTGCCACTGTTCCCATAATAACAATTTTTCTTCTTTGTTCAAATGAAATTTTCTAATGACACGTGTGATGGGTTGTTTTAATTCTTTTCCCTTTCCAAATCCACCTTCCTGTTGCAATGCATGATGGGCAG
Seq C2 exon
GCTCAATATTGTGCATGACACCCGCTACAAGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016871:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (disopred):
  C1=0.125 A=NA C2=0.346
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]