GgaINT0031673 @ galGal4
Intron Retention
Gene
ENSGALG00000010361 | MBNL1
Description
Muscleblind-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKW9]
Coordinates
chr9:22852750-22856458:-
Coord C1 exon
chr9:22856305-22856458
Coord A exon
chr9:22852786-22856304
Coord C2 exon
chr9:22852750-22852785
Length
3519 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTGCAATGCATGATGGGCAGGCT
3' ss Score
0.74
Exon sequences
Seq C1 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCGCTTGAAAAAACCAATGGTGCCACCGCAGTGTTCAATACTGGTATTTTCCAATACCAGCAAGCTCTTGCCAACATGCAGCTGCAGCAGCACACAGCCTTTCTCCCACCAG
Seq A exon
GTAAGTGCTGCCGCGTGCCTGGCGGGGTGGGAGGGCGGGAGCCGTGGGGCAGCACCAGGCGCCGTGCGGTGCCGCAGTGCGGTGCGGCCGTGCCGAGCGGAGGACGCTGGTGGAGGCTGCTTCCCTCCCGGTGCTTTCGGAGGCTGGGTGGGTGTTTTCATCTCTAACATAAAGATCAGCACTGTGCTCTGTCCTCCCAAATCAGAACTGGAAATCTTTCCTCTCGTTCCGCTTTCTCATTAACTTTTCTTTATGACACATCTCTTCAGCTCCTGTGTTTGTTTCTGTTTGCTGTGAGACCCCTTAGCCTTCCTGTGCTTAGAGGGAGGTGTGAGTCAAAACTGGAGGGTGTTGTTTGAGTTTTGGTGCAGTGGTCATAAGGCCCAGCCAGGCAGCCTTGCAGATAGCCAACCGTGAGCACACGCAGACAGTCAGGATCCACACCTCTGCTGCCAGAGCTTCGGGGCTGAGTAGCAGAAGTGAGGTGCACTTGGTTTTAGTCCAGCACAACCACAGTTACGCTCGTCCTAGTGCAGCTGCTGAAGCATTGATGTCTGTGCTACACACATAAGCAGAAATCCCTTTGAAGTAAACAAGACATAAAGCTTGAATATAGCTGTGGTTCTGCAAACAGCACTTCATGCAGAAGCATATTTTAGCCCTCCCTGTGAGCTTCTGCCTGTATTAACGCAGGCGAGTCAGGTTTTTCCACATGAACCCCACGTTAGAGCACCATTGTCAGTCTAGGAGGTAAGTGATGGAAAGCTGGGGTCATCTGACAGATAGGTACTCAAAACTGGAAGGAGCCTGAGGACAGCCCTTTGTAACTCAGGCTAGCTGAGGGAGGGGAGAAAGGAGAATGCAACTACTGAGTCTTTACCCAAACATTTTCAGCATGTGCATTCCTGGGAATTTGGTGCAATGCCTTTTACCATTCTGTCCTGATGGTAGAATTTTGGCATATAGTGATTTATATGGCACAAAAATTATTTGTTTGATGTAGTGGATGGTAATAACTTACTTGGATTCCAAAAACGTGTTGCAACCACTAGTGTGTATTAGCAGGAGCTTCGTGGGGTCAATGGAAAGGCTTTGACTAAGCAGACATTAGGCCAGGTCTCTAGACCATGTTCTAAAATATGGACCAAATGCATAAGCAAACACAGCCAATCCTGCTGGTATTGAACAATTTCACAAGTTTGTTTTGTAAAGAGTGGCTGGTGTAGTTATCTGCAGAGGTTTCCCACTTCCATTAAATCAAGGGGGGTTGGCTGGTTTCTGGAAGTACTCAAACTGCTCTCAATCGTGCCCTTTAAACTTAGAAACTCAGGTTGTAGTTTGTGTACACCAGACCTCATTGGCACAGCTACCTTCTTACTTTCTAACCTGCTGTGGAACCTGTAGGAGCTTGCAGAGCAGTTCTTGGTGCTTCACTTGAACTGTCTTGGCCACTCGAGTGTAGTGGATGCCCAACAAGAGGATTAAGGTCAGGGCAGTGAGGTACCGTTGATGCCAGAACACCCCCAGGGGAGGCGTTGTCACAGGGCCTGCTCTCTGAGGGCTTGCTGTCACAAGGCCTGCCCTCTGGGCTGCTGGAGCTCCCCAGCCCAGCCAATGGCTCGAGGCATTGCAGCACGGAGGGGAGTACCGATGGCGCTGTCTCTCCTAGGTGAGCTGAGCTGAGCTGAGCTGGCTGTATGGCCGATCCTGGCCTGTGCATGCCCACTGCACACAGGAGGGCTCCTAGAGTAGAAATCCCAGCAGGGAGGCACCTTTGTGTGGGCTGCTGCCAGGGGCTCAGCCGCTGCACTGCTGCTGCTCTATGGGAGCTGCTGGGCACCGCTCTGTGGGGCTCCCAGGGGATGTGGAAGCGCAGAGTTCCATGCGAGGGAGGAAAGCGCCGGGTGTCTGCAGTCACTCTGCTGGACAGGTGTGCTGCTGCTGTGAGGGGACACGTCCCGTTGGGATTTTCCAGACTGGACTGAGTATAATAGGCTGAAAGAAACAACGTGAAGGGGAGAAGAGAAGAAACTGCTTAAGCCACAGGTGAACGTAGAATATGCATCAAGTTAGCACGATTCCTCTGCTGAAATGGTCGGGAAGTGAGGCGGCCGTCAGTTACTGGCACATCCTTGCATTAACGCTCTGCCTTGTGCTGAGCAGCTCGGGAATGTCTGCGACTGGGCATCTATTATTCATGTGTTCTCATTAGTCAGAGCTTCTGAAGTTGAGATGAATATTAAGGTCACAGCAAAAATGGTTTTTATTGCTGGTAAGAGGGCCATACAGCATTGTGTCTTCATATTTGCACATCACTGCACCCTAGTTAGGATTTTCGTCTCTGCCTTAAGTTCATCTGCTGCGATTCATCCAGAACTTTGTGCACTGGTTATAATGCTAATGATGATAACTCAGACTGCAATTTTAAGCTGAAAAGCTTCACAGGGACATTGCAGAGAGTCATTACAAAAATCTAACCTGTTTTTAGCATGTAGGCCTAATTATGCATGGAATGATCTAATGTTCCAGATATAATGAAGCGTGCACTAACTTATAAATAGGGCTCTTCTTTGGAGAGGCACGACTCAGGTTCTTCTGTAAATCCCTATTAACACCCGGGTGTCAGAAACATGACTGAGAAAACAGTTCTACTCATGTTTGTACTTCATGGCCAAATGTTGTTCCATTCTTTAATCTCATAAGTGGTCCCACTGACGTCAGCAGTGGTTCACAGAGGGGGAAGTCAGGAAAGATACCCTTCTTTTAACCTTTCTTTGTGAGTATTTTTCATCTTTTCCATTACACAGAAATAGATCAGTAATGAGGAAACAGAGTTATTCCCTTTTCTTTGTAGCCCTACAGACGCAGCGATGGCAGGGAATCACCTCGTCCCTGCCACTAGTGCTGTTGTCTGACTCTTTTCCTGCTTACTTAAATGCTTCTGAAGCCGTGTGTGCCCCAGTACAACACTGGGTCCTTTGCAGAGCAGTGCCCTGCGCCCACAGCTCTGTGGAACACCAGAGCAGCACCGCACCACCGACAGCTGGCTCACGGACCTGCGCTACTGGGGGCAGGTGCAATTGCAGATGAATCTTTGCTGTATCTGAGGAAATCCAGTTGGAGAGCAGTGCAACACTTGTGTCGACAGGCAGAGAGATGTAGGACAGCAGTGAGGTTCCGCTGCAGGGCGCCCTCGTAGCGGTGCTGGTGCTCCAGTCGCGGAGGCGAGCACAGCCAGCTCAGCCCCACACCTAGCTCAGCCCCATTCCCCAGCTTAGCCCCAGCCCCCAGTTCAGCCCCACACCCGGCTCAGCCCGCTTCTCCCTTTCTGAAGGCCAGTTCTGATGGATCACTGTGCTGTGTGTGGTTTGATTGTGCTGACGGTTATGTGCCACTGTTCCCATAATAACAATTTTTCTTCTTTGTTCAAATGAAATTTTCTAATGACACGTGTGATGGGTTGTTTTAATTCTTTTCCCTTTCCAAATCCACCTTCCTGTTGCAATGCATGATGGGCAG
Seq C2 exon
GCTCAATATTGTGCATGACACCCGCTACAAGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016871:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.125 A=NA C2=0.346
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]