GgaINT0033894 @ galGal3
Intron Retention
Gene
ENSGALG00000005206 | ACSL3
Description
NA
Coordinates
chr9:9155524-9157468:+
Coord C1 exon
chr9:9155524-9155633
Coord A exon
chr9:9155634-9157329
Coord C2 exon
chr9:9157330-9157468
Length
1696 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TGATGTTTGAATTTCTACAGGAA
3' ss Score
8.35
Exon sequences
Seq C1 exon
TTGTTACTCTGTATGCTACCCTAGGAGGTGCAGCAATAGTACATGGGCTAAACGAAACAGAGGTGACCACCATCATTACTAGTAAAGAACTGATGCAAACAAAACTAAAG
Seq A exon
GTCAGAAAGTGTTATTTGTATCTTTTTGCAGTATATCCGTTCATTATTGTTAAAAGGTTTGGTAGCTGGATGAAACTATGAATTGCCTTTCTGTAGTGCAAAGACCTCTTACAGAACGAGGTCTTTGTATCTGTCTTCATATACATAAAAAATGATAGCCTTGGGATTTAGGCTCCAGAATGACTTCTGAGAGCAGGATGAACCATTTGTGCTATTGAAGAGCTGCAGTCCTGTCTGAAACAGCACCTCCACAGGAACTGCTGTGGCTTCTGGGTGGATTTAGAGCCTATAAACTCAACTGTTAAAGGAAATGGGAGGAACAGAAAAATGTATAAACTGTATATGAATAACGAAATGTGATTATACTCCTGGTTTATTCTTGGATGTTTTCCTGGCAGAGAATTAATGACTTACATCTCAAGATTGGTGCTTGAAGTCAGAGCTGTTTTCTAGTGCAGAGAAAGCTTATGAAACATTAGTATAGCTTTTTTTTTTTTTTTTACAAAAAATAGTCCCTCAAAATGTATTTTGTATTTAACTTTTTTAAGCCAATAAATCCCTGCAATCCATTAAGAATAGTTCAGAGTTTTGATGTCATGCCTTAACCAGCTGGGGTTCTAGGTGCCTTGTTTCAAACTCCAGTGTGCTGGAACCGATCTTTTCCTGAGCTGTTTTCATAAAGAGGACTTCCAAGACTTGGTTGCTCCTTTCTCTGTAAGCTTTGATTTTGAGGATGCGACTGAGTCAGTGTCAGCTACTTACTGTGGCGTGTCAGTTGGCCAACTGCTGTGGAACTCACAGGCCAGCAGCACTCACAGCTTAGGTAACTTACCCCTCTGTTGTTACTGCCAGGCCAAGGGGTACACGAAACAAACGTCACATGGTAACTTTGTGATGGTTTGTTTCTTTGGCAAAGCCCTGAGGTCAGGATACCTGCTGTTTTCTGAGACCTTACCGACCCTGGTAGAACAGGTGGAACTATGATTCTGTATGAGTTAAGCTACAGTCTGTATGAGGAAATAGATATTTCACCTAGGAGAGTTGTTTAATTAAAGTTGTGCGTTATTGCTACATTTTGAATGATAATTTTCCAAACTTTGTTTCTTTTTCTTAAATTACCAGAATGTTACTGCATATAGTGCAAGCTGACATAAATAATCATTGTAAGAAAATGACAGAATTCTCTTGCAGAAGAAATTCATCTTTCTTTACAACTTTGGTAGCTGTTTTAGAAGTCTCAGTTTACTTGAAATACTTAACTAGTACTTAAGTAATCACTTTCTGTATTTTTTGCATGGTGTTTGTTGGTTTTTTCAGACAGCATAGTCATCAAGTAGTGACCTAAGCATTACTGTGAGCTCCGTGATGCCCAGGCCCTTTTCTTCTCAGCGTTCTGTGAGAGTGGGCAGTCAATCTCTGCTAATCTTCATAGTCTCAAGTGTGTGCTTCTCTTGAAATAAGACCCTGATTAATAGATAGTTGGAGAAATGTTTGGACTTATAAATGGAAAGTTCAATTAGTCCTACAAATCTAAATGTGGAAAGCTTTAAGCATTGCAGCCATGTGATCTAGACAAGTTTGTGCTCTGTATTTTGAATCCTCAAATATTTTATGCCTTTCTTTTTTTAATGTATGCCATAGATAACTTTTTCTCTTGTTGGCCCAAACCTCACGATTGATGTTTGAATTTCTACAG
Seq C2 exon
GAAATTGTTTCTCAAATTCCACGGCTGCGACATATTATTACAGTGGATGGCAAACCAACAACATGGTCAGAATTTCCCAAGGGTGTCATTGTTCACACTATGGCTTCTGTGCAAGCTATGGGAGCCAAGGCAGATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206:ENSGALT00000008360:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACTCTGTATGCTACCCTAGGA
R:
ACTATCTGCCTTGGCTCCCAT
Band lengths:
247-1943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]