RnoINT0012370 @ rn6
Intron Retention
Gene
ENSRNOG00000014718 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:RGD Symbol;Acc:70552]
Coordinates
chr9:84576925-84578707:+
Coord C1 exon
chr9:84576925-84577034
Coord A exon
chr9:84577035-84578568
Coord C2 exon
chr9:84578569-84578707
Length
1534 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATTGTTATGTGTTTCTTTAGGAT
3' ss Score
10.61
Exon sequences
Seq C1 exon
TTGTTACACTGTATGCGACTCTGGGAGGTCCAGCCATTGTCCATGGACTGAATGAGACAGAGGTGACCAACATCATTACTAGTAAAGAACTCCTGCAAACAAAGCTGAAG
Seq A exon
GTGAGGACCGCAGGTACCTTTAAGAGTGATGCTTCGACTTTTCCTGTGATGCGTCATACTGTCCCTCAGTTATCTTTGTGAGATTTTGTGTTTTTCTAAAGAACATAAAACATGCATTTTATATATATATGTATATATATATATATGTATATGTATATGTATATATATATGAGATAGACCATAGGTACAAAGTATTAATATGCCAACGTGGAAAGGATGACAGTTTTTATTGTGTATTATGTATATAAAGTAAAATAACAGTTTTTGCATGTCTATAACTTTTGAGTTTGCTCTCCTTTCATCATGGGGTTCCTGTGTCATCAGGCTTGGTGACAAGAGCCATTTTGCTGATCTCTCAACATTTTATATTTATATCATGTGTATACGTGTTTTGCCTGCATGCATGTCTATGCACCATGTAGATAAAGTGGAATGCTTGCCTTTGTAAGCACAGGGACCTGAGTTTGATTTCCAGAACTCTTATTTAAGAAGTCAGCTGTGGTCGTGTCTGCCCCTAATCCCAGCTCTAGTGCTAGAGGAACATCTGGTCCCTGGGGCTCACTGCTTATCATGGTTCATTCAGGCCAGAGGGCCCTGTGGGGGAGGGGCTGGAAAGCAGCTAAGGAGCCCCACCAGAAGCTGGCTTCGTCCTCCTGTGCACACACACACAGACACACCATAGGCACCTGTATGTACACACAAGAGCAAGAGGTGGTACATGCCTGTAATCTCTGCACTTGGGAGGTGGAAGTAGAAAGATGAGTAGTTCAAAGTCACCCTCAGCTATATATAGTAAGTTTGAGGTCAACCTAAGGTGCCAGAAATTTTCTGAAAGACAGTCTTGACAGGTGACCCTCAGGGAAGGAGGGAGAGATGAAGGAAGAAAGAGAGGCCGAGGTAGAGACACAGAAGAGAGAAAAGAGGAAGCAGGGACAGAAAGGGTGGGAGGGTGGTGTTGATTCCCTGGAACTGGAGTTTTATAGACAAATGTCAGCTGCTATGTGGGTGTTCTTAACCATCGAGCCATCTTCCAGACTTGAAATGTTTTAAATATTCATTTATGGATCATTGAGTAATGACTTGCTTGAATATTTTAAGTACTAAAATGGGAGAGATTTTATGAAATGATAGGAAAACGGTTCTTATAATTCCTAGGCAACTTCCCCTAAAAACATTACCATCTCAGACATTCTTCTGTTTTTCTTTTTTAGAAAGTTTCCAAGTGAGTTTTTTTTCTTCCCTGATACATTCTTTTGTATCCTCTTGAAAACATGAAGGCCTTTGGGCTTTTCTATAAGTAGTACAGGTATTCTGTGTCTATATGTCCATTTTGTGGACTTTGTTGATAAGGATTTTATCAAGGAAAATTGTATACACGGTGCTATAGAATAGTGGTGAGTCCACCCCCTCCCCTTCCTTCCTTCCCTCCAGCCTGTCTCACTAGCCCCACCACTTAACTGTGGTGACCTGTGCTCTTGCGTCAGAGACACTCAACCATTGGCTAACAGATGATGATTGTTATGTGTTTCTTTAG
Seq C2 exon
GATATCGTCTCTTTGGTCCCACGTCTGCGGCATATCATTACTGTTGATGGGAAGCCTCCAACCTGGTCTGAGTTCCCCAAGGGCGTCATTGTACACACCATGGCTGCAGTGCAGGCTCTAGGAGTAAAGGCTGACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014718:ENSRNOT00000020161:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACACTGTATGCGACTCTGGG
R:
CCACGTCAGCCTTTACTCCTA
Band lengths:
247-1781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]