MmuINT0010166 @ mm9
Intron Retention
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78686844-78688795:+
Coord C1 exon
chr1:78686844-78686953
Coord A exon
chr1:78686954-78688656
Coord C2 exon
chr1:78688657-78688795
Length
1703 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGATTGTTGTGTTTCTTCAGGAT
3' ss Score
10.38
Exon sequences
Seq C1 exon
TTGTTACACTGTATGCTACTCTGGGAGGTCCAGCCATTGTTCATGGACTGAATGAGACAGAGGTGACCAACATCATTACTAGCAAAGAACTCTTGCAAACAAAGCTGAAG
Seq A exon
GTGAGGACCACAGCTCTCTTTAAGAGTCTGATGCTTTGACTTTTCCTGTGATGAATCATACTGACCCAGTTATCTTTGAGATTTTGTGGTTTTCCTTTAGAATATAAAAAGTGCAATATATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATAGGTATATAGGTATATAGGTATATAGGTATATAGGTATATAGGTATATGTATGTATATATGTATGTATATATGTATGTATATATGTATGTATGTATATATATATGTATGTATATATATGTATGTATATATATATATTAGATAGACCATAGATAAAAATTGTTAATTTGCCAATGTTGAAAGGATGACAACTTTTTATTGTATATTGCATATATAAAGTAAATTAATAGTTTTGCATGTGTATAATTTTTGAATTTGTTTGTTTGTATGCATCTGCATTCATATATGTGGTTACATGTGCCACAGCACACCTGTGAAAAGTCTGTACAACCTGTGGGAGTTAACTCTCCTTTCATCATGGGGTTTCTTGTGTCATCAGGCTTGGTGACAAGTAGAATGTACCTCCTGAGCCATTTTGCTGGTCTCTCAACATAATATATTTATATCATGTGCATACGTGTTTTGCCTGCATGCATGTCTATGCACCATGTAGGTAAAGTGAAAGCTTGCCTTTGTAATCACAAGGACCTGGGTTTAATTTCCAGAACTCTTATTTAAAAAGTCAGCTGTGGTCATATCTGCTCATAATCCCAGTACCTGTGCTAGCAGAACACGTGGCTCCCTGGGGCTTACTGTTGCCATGGCTCAGGCCAGAGGACCCTGTGGAGGAGGGTTTGGAGAGCATCTCAGGAACAGTGCCAAAAGTTGTCTTCTGTCCTCCCACTCATGCGCATAGACAGACAGACAGACAGACAGACAGACACACACACACACACACATCTGTGTGCATATGCACCCATACGTGTAATCTCTGCACTTGGGAGATGGAATTAGAAAGATTAGTAGTTCAAAGTCGTCCTCAGCTATAGAGTAAGTTGGAGTTCAATCTAAGTTGGGAGAGATCTTCTGAAAGACATACAGGTGACACTCACGGAGGGAAGGAGGGAGAGAGCAGTGGAGGAAAGAAAGAGGGAAGGAGAGAGAGAAAGAGAGACAGAGACAAACATACAGGAGAAGAGAGAAAAGAGGAAGTAGGGAAAGAAAGAATGGGGGTGGTAGGTGTACTAAAATGGGAGACATTTTATGAAATAATAGGAAACGGGCAACTTCCCCTGGAAACATCACTATCAGGCATTGTTTTATTTTTCTTTTTTAGAAAGTTCCCAGGTGGACTTCTTTCCTTCTTTGATATATTCTTTTGCATTCTCTTGAAAATATGAGGGACTTTGGGCTTCTCTATAAGTAGTTCAGGTATTATGTGTTTATATGTCCATTTTGTGGAGCAGTAACTTTATTGATGAGGATTTTATCAAAGAAGATTGTATACACAGTGCTATAGAATATTCGTCCAATTCCCCACCCCCTCTTCATGCCGTTCCTCCGGCCTGTCTCCCTAGCCCCTACCACTTAACTTTCGGGGCAAGAAATCAGTTGGTGGCTCAGTGTGTAGAGAACTGTGCTCATGTGTCCCGAGTTACTCAACTGTTGGCTAACATCATGATTGTTGTGTTTCTTCAG
Seq C2 exon
GATATAGTCTCTTTGGTCCCACGTCTGCGGCATATCATTACTGTTGATGGGAAGCCTCCAACCTGGTCTGAGTTCCCCAAAGGTGTCATTGTACACACCATGGCTGCAGTGCAGGCTCTAGGAGTGAAGGCCAACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883-Acsl3:NM_028817:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACACTGTATGCTACTCTGGGA
R:
ACGTTGGCCTTCACTCCTAGA
Band lengths:
246-1949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: