GgaINT0034065 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDQ4]
Coordinates
chr9:15137503-15139605:-
Coord C1 exon
chr9:15139464-15139605
Coord A exon
chr9:15137691-15139463
Coord C2 exon
chr9:15137503-15137690
Length
1773 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGTGAATATTTCTCCATAGAGA
3' ss Score
5.65
Exon sequences
Seq C1 exon
TCTGGAGATGAACCCAAGTCTACGTACAATGAAGAAAACATGGTTTATTCTATAAATGACCTCTTCTTGGGTGGATCAGAGACAACAAGCACTACTTTAAACTGGGGCCTGCTCTATATGGTAGCATATCCAGATGTCCAAG
Seq A exon
GTAAGAGGAAGGGGATAAACGTATCATGCATATCTCTGATGCAGTAGAACAGCACAGATGTAATGGATCTTGAGTTGGGTTCTGTCTTAGACAGCAGTAAACATAACTGATGGCTGAAAATAATAAACCATAACTGATGCGTGATAGCAGAGATGCCACTTTTTGGGAACTTCAGTTTGGTTTTGTGTTGGCCCGGTATGAGTGCTGGGGGCTAATAGGGAGTGCTGCCCTTCTGTGTGCTCTGTGAGTCAGAGGAGTAAAGCTAACCAGCTGAAGGGCAAGTGGCAGCTTCATATTTTTGTCTATCAGTCCATTCCTGAGCGCCAGGTATCTGGGTGTCAGTTTAATCTGAGGTTAAATTAACTCTATGATGCATTTGAGTTTCTTGCAGCAGGCGTTATTCCAGCTGGGAGGAGAATTTGATGGTTTATCTGCTATGTCTATGTACTTTTTAGTACTTTATTTTTAAGTCTATCTTTTAAATATCAGTCACTGACACAGAGCACTAAATGAAAACCAGAGAACCCTTTCTTGTGCTGGATAACAGAGAAGCCATTGTTAGATAGCAGAACATGTGCAAATACCCAGAGAAGAAGAGGAATTTAAATGGATGAAAGAGATGAAGATAAGAAAAAATTGCTTAACATGTATCTGTCAGACAATAAGGTCTACTTAATCTCGTGTTATTGCATGGTTATTATCACCCTGTAATTAAGGTTATGAAAGCGCTGACTCACCTAAATAATTTTTCTTATCTAAATATAACACCCTGAATATACTTGGGAAAGCAGGGCGTGTGCAGGATGATCCATGCCCAGCTTCTTGAGTCATATGTTTCATCCAGACTCTTGTAATGAACAGACACCAGTATGTCTGTCCCCTAACAATTGGTGTCTTTTTTTTTTGGAACCCATTCATAGCTTTGCCTGCATCGACACCCAATGACAGTGATAAGCATCTCCATTATGTGCCATATGGAAAAGTTTGGGTTTTTTTGCCTAATCATTGAAGTGGGTTCTCCTTCTCTGAATTACTGGATCAGAGATGCTTTTTGGAGTTACCTGACCTTTGTGATGGGCTGCTGGCAGTTTTAGAGCAGGTTTCATTGGAATGAATACAAGCAGATCGATAGAAAATGGACTTCCATGCATTTTAGTATTGCTTTAAAGGGCCTGGAAAAGACTAGATGATTTGTTGTAAATCTAAGGCGTTTTTGTTATGCATATGCTGCCTCTCTTGAAATGGATGAAACAAAATTATGCTCCCAATGCTCCTGGGCAGTAAGTAATTTAAATGGTACTACTCTTGACCAAAAGATAAGTGCCAAAAAGCTGGCATTGCTTCATTTAACATGTCCTGCATAAGACCCATTTTCTTTTAATAGGAATTAGGCTTTTAAGGTACAGATTCACCTTGCTTGAATTCCAGACAGCTATGACTGTATTGGTTGTAAGTGGCTGTAAGTGCTCAAGGCACCCAGCCAAAAGAAAACACAATGATAAATCAGCTATCTCTTGTACTGATGCATAAGGCAACACTTAGTTCTAAAATTCTGAGCAACAAATATCTTTTCTTAATATAGCATCAAATAGTGTCAGACCCAGTAGAGTTCCTACACGTTTAAGCTGTTGGAACACCTCACTGACTTTCCTTTATGAAATTAGCCTACATTTTTGTATTAGTTTTGTTGCTGTCCTAGTAGTTCTAAATGGAAAATGTCTTTGAATATGGTGATGTATTTTCCCACCTGAAACAGTGAATATTTCTCCATAG
Seq C2 exon
AGAAAGTGCAGAAGGAGCTGGATGCTGTTTTGGGTCCTTCCCAGATGATCTGCTATGAGCATCGGAGAAAAGTGCCCTATACGAATGCTGTGATTCATGAGATCCAGCGCTTCAGCAACATTATCTCTATTGGCATGCCCAGGGTGTGTGTGAGGAACACGACATTGCTGGGATTCCCCCTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008105:ENSGALT00000013160:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGATGAACCCAAGTCTACG
R:
GGAATCCCAGCAATGTCGTGT
Band lengths:
318-2091
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]