MmuINT0045090 @ mm9
Intron Retention
Gene
ENSMUSG00000082932 | Cyp2j8-ps
Description
cytochrome P450, family 2, subfamily j, polypeptide 8 [Source:MGI Symbol;Acc:MGI:2449817]
Coordinates
chr4:96137175-96142248:-
Coord C1 exon
chr4:96142107-96142248
Coord A exon
chr4:96137363-96142106
Coord C2 exon
chr4:96137175-96137362
Length
4744 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GAGCCCCTGTTTTCTTGCAGAAA
3' ss Score
9.09
Exon sequences
Seq C1 exon
TACTCAGACAAGACAACTACAAGTTTTAATGAAGAAAATCTCATCTGCACCACTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCCACAGCACTGCGTTGGGCTCTGCTCTACATAACTGTTAATCCAGAAGTGCAAG
Seq A exon
GTGAGCATGTTCTGGGTGAGCCTAGAAAAGGCATAATAGTGTATCTGAACATTTTTACTTACATGTGGCCAGAAGATAGAACAGTGGAGCAGAAAACATGGAAGAGCTGTGAGACAGTTGCTTTGGAGAGCAGGCATGGCCTTCACATGCCATATCAGGATTATGATGAGTCATAGGTGCACACTTTATAGTCTAGAATTGAAGGAGCTGCAATTCTGGGGTTAAATAGATAAGTCAGATGTTCTTGTGGTAGGGTTCACAAAGAGTGACAGTGTCACATTAAAATCTACTCAGTCTGTACTTCCTTTTCAGCACTGACATCCTATTGTGCACTGACATCAGTGTGATACTTACCATCTTATAGATGTTATCTCTGCTGTTGAGATTCAACCACACGCATTCTGCATGGTGCCTCTACATTACATTTTTCTCCATTGGTTTTGTCCTTACTCTTACCTCTAAGTACGTGTTGAGCATTCTCTCTATTTAAGAAGTACTATTGCCATTTTGAGCTTTCAGAAGAATCTTCTCAGATACTACTTCCAAATATATTTTAAATTCTCTTAAGAGTTCACTGCCTCACATAAAGCTGATATTCTTTCCATCAAAAGACACACCAATGTGCCCCATTATAGGATTGAGCTTTCTGTTTGTGTCTCCACAGGGATTTCACAGCTTCAGAAATAATGGCTCATCCCATATTTTTAATTCAATGGTTTATCAAAGAAATATTCAGGTGCTATTTTTCATGTCATAAAATATTTTTTCATGATGTGGTAAATGCTTATGTATGAAGGTTAAAGTCACTATGGCACTTTCAAGTCACCTATTTTGCCGTAAGATGTAGTGAACACAACACAGTGATTTACAAGAGTAGTAAAGATCAAATGGTTATTTCTTGAGCTCCATTGACTTTTTGAGACAGGGTCTTTCAATGTCCTGAAAATCACCAAGTAGATAGGACTGTCTGGCCAGTGAAGCATAGCAAACTGACACTCTCTTCCTCCCTGGAAGTCTGGAATTAGAAGTCTGTGCCACCACACCTGGATTTTTTTAAGTGAATTTTTTTGGGATAAAACACAGATCCACATGTTTACACATCTATCACTTTATTTAATGAGCATTTTGCATGCCCTACATGTTTTCCTTATTGATCAAAAAGTATATACTATTATATATATATGTTACCTACATTTCTATTTCTGTGATGTAATATTATAACCACAATTAATTTATATATTGTAGAGCTTATTTTGAATAATAGAATCAAGAACTATGCAGCAAGCATTGAAAATTAGAATTGTAAACTGAGACATCACATTTCAACTGCACACAAAAAGCACAGAGTAAACTGGAAGTAGAACAAGTCTGGAAAACCTTAAACCCATCTCCACTGACATATTTTCTCCAGCAAAACTCTGCACCCTGAAGATCCTATGGATTCACAAATAGCATCATCACCTATTAGGGCTGTTTAAATACTACAGCCTGTACTTTACACTTCTAAATTAATGCTCTTCATTTTGGCCATTGATCTCTATAGACACATGGTATGTTGTGATGCAAAATTCATTTAGTCTAACTTTAAAAGTTCACATTGTCTTTGACAGTCTCTATAGTATTCAAAAGTTCAAATTCTCTTCAAACATTGAAAGTAGGCAATCTCTTCACTATATACCACTGCAAGGAAAAATATGCAGATTTATATACTCAAAACACACATTGGAAATGAATACACATTCCAATTCCAAAAGGAAATAATGGACGTACAGTAATGAAATACCGGGGATAAAAGCAAGTATGGAACCCAAGAGGTCAAATATAAATCTTGTAATTCCATGGATGATGCCTGTAAACTAATATAACAGGACTTAGAAGGTTCCTCCAATTTAGCATGGCTGCTTGCTACATAAAGTCTCTTAAGGACTAGTTACAATCTCTGTGTTGTGCAACTTTTTTAATGTATCTCATAGATCTGAAATCTCCAAAATCTTGAGGATTCGGGGATTCTACTACAACCCAGGATTCACGTTCAAAACTTCTTCAAGTGACCTTTCACAGGATTTTCATGTGGACTCTCCTATTATATGCCACCTTACCTTAGTAGCTATTTTAAACTCCAGAGAAAGAATCATAAATACTGTCACTCTTGCCTCTCCCATACTCTAAAATAAGAGGATGACACTGCCAAGTTCAGCTACCACATAGAGATGGTTCTTGGCCTTTAAATCACATTTGTAGAATGTTTTTTTCCAGAAGCTTAAGAATTGGTCTATAATCCCAACTGTGTATAAAATTGGGTTGATATGTGAGAAGGTAGCCAGAGTAAGAAACTAATAAGTCACCTCTAAACTACACATAGAAAACAGAGACAAAACTGGACATGGGGCAAGACTTTTAACATTCAAGTCTGACAACATTGGAACACTTCTTCCAGCAAGGCTACACTATCAAAAGTTTCTATAATCTACAAAGAGTGTATGGACTTAGATCAAGTGTTCAAATATCTGAGACTATGGGAAACATTTTTTTTAAATTGTACAATATGCATGTTGGGTTACAATTTAAAATGCATGCTTGCCTGAATATTTACATTTTACAAACCTTGAAACCTACTGAGAATAAGGTTGAATTCCATAGCATAGGCTCTAGAACATCACATTTATATGACATTTATGGTACTCATTTTCGCTTTGCAACATGTATACTAATCAAGAGATTGGACCATGATAGATGAAGGACTTAATACATGAGTTAGAAACCAATTCATTGTTGGTGTTCAGTCTATTTGGTATACTCTAATGCTAAATTCTAGGCCTATTAATGACTTAATGACTTCACACCTTTTACAAGCTTTTTTTTTTGCAACCAATTTATAGAGGTATTAGAGGGCAGTGGATTTGGAATGATGTGGTTGGAGGTGGAGAGATAATGAAAAGGAGAAAAAGGTCATGAGTGGAGATGGACTATAAATGAATAGTCAGGAGAAACAACCAGTATCTGAACTAAACTGTTACTAGCAGTTAGAAGAGTAGATTAGGGATTACCCCCAGTAATTGTCAAGCCAAGTAAAATAACCATAGTTTGAGTCTTATTTATTTCTAAGCTGGTCAAGGATAAGTTTAATTTGGTTGTATTACAATTAATTCATGAGGAAAGAACTTTTGATAACAATTCTAGCTTAGATGATCTTACTGGACATGGTGCCAAATTAAGTAGCCAATTGCAAAACTGCACAAACTGTTCTTTCCTACTGAAGTATATTATCTTCAGTACAAAATTCCCTAGGCATAAGGAAATTGAATGCATACAGGGACATAAGTGTATTTCATAGATATTAAATTTCAGCTTCAATTGAAATTCTTTGGCAATTGCATCCTAAAATTGCTATGATGATTTGAAATTGGAGGACATTATTTACCATAATTCTTAAGATTCTAAGACAAGAGTAGTACAGGTTTGAGGCTATATAGGTACAAAGGAAGGCTGTACTTCAAAAACAAAGAAAAAAAACCAAAAACATATATTATGATAAATTTTGTTATATGCACGTCACCACTTAAATAGTTTTAGACCATGGTGCACTGAGATCCATCCATTGTTATCACAGAAGAAAAGGCTATACTAATCCATACAACAGGCATATAATTCCCAATTCCAAATATTTTCAGAAGTAAATAGTCACTTATTGAGGCTCACCATTCTCTATGGTGGATCCCATGAGAATTGCCTTTTAATCCACAGGAAAGGAACAGGGGAAGAAAGCAGTGAACTAAATATCTGACCTTGACACAGTATAAAACATCATGTCTATTTGCCTGTTAGTTATTCATATGTTCAAAGTGACTCCAAAAGGAATCTTAGAAAGTAAGATTTTAGCTGGGCCACAATGGAATCCCCATTATGATAGAAAATGGGGAAACTACAGGGGGGATTAAAGCAATTTCAGTATTGTTATTTTTATATCAGTTCACCTACTTATGAAAACATTCTTAAAATAGTACTATTTATTCTTAGTAGTCACATGAAGAAACTGAACCTTTGAGATTGGAATTAGATCCCACAGCAACAACATTCACTAACTGTAATGTACTCTGATACATCTTGATAAGAAATCATAGTCTAACAGATACTGAGTAGTTTGAAACATTGTGTACTACCTATGAATTCATGTCCTGAAGTTTAGTTACCACTGAAGTGATTAGCCTTTTGAAATGCATTAGTGGCTTTGAAAGAAATACTAGAGAGATCTGTGAGGTTTTTTTTTTTTTAAGCTGCTAAGTATACTGGCTGTAAGACTGTACGACTGAACTCCTGAGTTCAATCCCCAGACACCTGATAGTACAAAACCAGAACTGACTCCTGCAAGTTATCCTATGAACTTTGCTTTTCATTTTGGAACAAGTGTGAGTGCACACAAATAGAAAAATAGAATATATTTTAAATATTTCCTTAAAAATAAAATGGGATCCAAAGAAATTCCCTCCTTCTTTGGATGTTAGGATACAGAATAGCTTGACCATATAGAGTCAAAAAATTAATGGTGGTTATGTTGTAAGCAGAAGGAAAATTCGAGTTGAGAATATTTCAAAACAGTTCTTTGAGAAAATGTAGTACATGTTGGTTTTTTTGTAATTAGAACATTGTGTGAAATCTGAAAATCCTAGTATCTTGGAGACAACTTTTCTGTCTTCAGAAGAAAACTATAAACTTTGAAGCTAACAGAGCCCCTGTTTTCTTGCAG
Seq C2 exon
AAAAAGTACACTCTGAGATTGACAGAGTGATTGGCCAAGGGAGACACCCAACCATAGATGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTACTGAGGATGGGTAACATCATCCCTTTGAATGTTCCCAGGGAAGTAGAAGCTGATATCACACTGGCCGGATTCCACCTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000082932-Cyp2j8-ps:NM_001104927:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: